Input parameters:

  Query = ENSMUSP00000125657 (Len=1151)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000125657, Len=1151):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XALGKGRRRSFRKKREKPRMEPWKSHPGDSKGPDSEDVTIPGGVDLLALPQLCFPGCVCVASEPKEDYIHFLVLTDVCGN 80  
WD40-rpts                                                                                      

Query       81 RTYGVVAQYYRPLHDEYCFYNGKSHWEPSVISARCFVPFAVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFA 160 
WD40-rpts                                                                                      

Query      161 ARLSLIPSPPPGPLHLIFNMKPLQVVFPSRADPESPIVDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLM 240 
WD40-rpts                                                                                      

Query      241 AECFVAYLHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLVLIDIDHGSVTCSKSSDDNIDIPDVP 320 
WD40-rpts                                                                                      

Query      321 LLLAQTFIQREVKNHLNYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKARLNGRMDAFARMDLDTQSEEDRIDR 400 
WD40-rpts                                                                                      

Query      401 MLISPRRPTVEKMASRKASPLHITHRRMVVSMPNLQDISLPELPPRNSSLRIMDTSNCRSSSPVLKVTPKSTYMFKIPDI 480 
WD40-rpts                                                                                      

Query      481 HFPLESQCVQAYYTDFVTLLSKAMALLGPGDSLLLARYFYLRGLLHLMQGQLLSALLDFQNLYKTDIGIFPADLVKRTVE 560 
WD40-rpts                                                                                      

Query      561 SMSASERAQAERTPELRRLITEVFDKHGEAPKADDAVKNFELPKKHMQLNDFVKRVQESGIVKDAVIIHRLFDALTFGHE 640 
WD40-rpts                                                                                      

Query      641 KQIDPETFRDFYTCWKETEAEAQEVSLPALLMEHLDKNECVYKLSSSVKTNRGVGKIAMTQKRLFLLTEGRPGYVEIATF 720 
WD40-rpts                                                                                      

Query      721 RNIEEVKNSTVAFLLLRIPTLKIKTVAKKEVFEANLKSECDLWHLMVKEMWAGKQLADDHKDPQYVQQALTNVLLMDAVV 800 
WD40-rpts                                                                                      

Query      801 GTLQSPSAIHAASKLAYFDNMKKKSPMAVPKTTSETLKHKINPSAGETAPQAIEVLLYTPGRLDPAEKVEDAHPKLWCAL 880 
WD40-rpts                                           (__________________WD 1_________________)  

Query      881 NEGKVVVFDASSWTVHQHCFKVGSSKVNCMVMAEHNQVWVGSEDSVIYIINVHSMSCNKQLTDHRSPVTGLAVHNGKKPS 960 
WD40-rpts                  (_________________WD 2________________)   (__________________WD 3___

Query      961 EIYSCSLDGTVIAWNVSTLRVISRFQLSYGDLLSISLHNDRIWCCTVHKILVVTPQGFVRQELKHPKDASFLAFQLLPEE 1040
WD40-rpts      ______________)   (_________________WD 4________________)(_________________WD 5_

Query     1041 QQLWAASTGVSELYMWSLKDLDQPPQKTYLQDCSEVTCMIRVKRQIWVGGRGLSQGKTRGKIYVMDVEKVTVEKELVAHL 1120
WD40-rpts      ________________)     (___________________WD 6___________________)   (__________

Query     1121 DTVRTLCSAEDRYVLSGAGQEEGKIAIWKVE 1151
WD40-rpts      _______WD 7_________________)  

7 WD40-repeats found in QUERY=ENSMUSP00000125657 (Len=1151):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   838-878      6.48  382.47  0.00044       12.5%     25.39
  WD 2:  Seg 20   893-931      6.42  379.70  0.00047       15.0%     50.39
  WD 3:  Seg 24   935-975      8.11  449.82  5.4e-05       32.5%     44.48
  WD 4:  Seg 28   979-1017     4.03  280.97  0.01014        7.5%     29.40
  WD 5:  Seg 32  1018-1057     7.47  423.05  0.00012        5.0%     50.12
  WD 6:  Seg 36  1063-1106     4.70  308.84  0.00428       27.5%     45.72
  WD 7:  Seg 40  1110-1149     7.07  406.64  0.00021       25.0%     47.13

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  838-878    KHKINPSAGETAPQAIE-----VLLYTPGRLDPA-EKVEDAHPKLWC
   WD 2  893-931    -WTV-HQHCFKVGSSKV-----NCMVMAEHNQVW-VGSEDSVIYIIN
   WD 3  935-975    -MSC-NKQLTDHRSPVT---GLAVHNGKKPSEIY-SCSLDGTVIAWN
   WD 4  979-1017   -LRV-ISRFQLSYGDLL-----SISLHNDRIWCC-TVHKILVVTPQG
   WD 5 1018-1057   FVRQ-ELKHPKDASFLA-----FQLLPEEQQLWA-ASTGVSELYMWS
   WD 6 1063-1106   -QPP-QKTYLQDCSEVTCMIRVKRQIWVGGRGLS-QGKTRGKIYVMD
   WD 7 1110-1149   -VTV-EKELVAHLDTVR-----TLCSAEDRYVLSGAGQEEGKIAIWK

   WD40 Template    TGEC-LRTLSGHTSGVT-----SVSFSPDGKRLV-SGSEDGTIKVWD