Input parameters:

  Query = ENSMUSP00000125423 (Len=434)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000125423, Len=434):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASE 80  
WD40-rpts            (_________________WD 1_________________)   (_________________WD 2_________

Query       81 DKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIA 160 
WD40-rpts      _______)   (_________________WD 3________________)   (_________________WD 4_____

Query      161 SAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDG 240 
WD40-rpts      ___________)   (_________________WD 5________________)   (_________________WD 6_

Query      241 ELLTSGGADAQVLIWRTNFIHLHCKDPKRNLKRLHFEASPHLLDIYPRSPHSHEDRKETIEINPKREVMDLQSSSPPVVD 320 
WD40-rpts      _______________)(____________________WD 7___________________)                   

Query      321 VLSFDSTTMTDSTYRAVPGKGEDICRYFLNPLLMPECSSTTVKKRPEDVSDVPSESLRSVPLAVADALEHIMEQLNILTQ 400 
WD40-rpts                (________________WD 8_______________)                                 

Query      401 TVSILEQRLSLTEDKLRDCLENQQKLFSAVQQKS 434 
WD40-rpts                                        

8 WD40-repeats found in QUERY=ENSMUSP00000125423 (Len=434):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46       9.70  515.51  7.0e-06       37.5%     55.63
  WD 2:  Seg  5    50-88      10.10  531.91  4.2e-06       45.0%     55.28
  WD 3:  Seg  9    92-130     10.54  549.97  2.4e-06       50.0%     52.66
  WD 4:  Seg 13   134-172      9.86  522.15  5.7e-06       27.5%     54.53
  WD 5:  Seg 17   176-214     10.11  532.38  4.1e-06       40.0%     55.25
  WD 6:  Seg 21   218-256     10.45  546.53  2.7e-06       45.0%     56.16
  WD 7:  Seg 25   257-301      6.56  385.54  0.00040       10.0%     39.24
  WD 8:  Seg 31   331-367      4.75  311.00  0.00400       12.5%     19.05

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-46     PHARAYRYVGHKDVVTSLQFSPQGNLL-----ASASRDRTVRLWV
   WD 2   50-88     -KGKSSEFKAHTAPVRSVDFSADGQLL-----VTASEDKSIKVWS
   WD 3   92-130    -QRFLYSLYRHTHWVRCAKFSPDGRLI-----VSCSEDKTIKIWD
   WD 4  134-172    -KQCVNNFSDSVGFANFVDFNPNGTCI-----ASAGSDHAVKIWD
   WD 5  176-214    -NKLLQHYQVHSCGVNCLSFHPLGNSL-----VTASSDGTVKMLD
   WD 6  218-256    -GRLIYTLQGHTGPVFTVSFSKDGELL-----TSGGADAQVLIWR
   WD 7  257-301    TNFIHLHCKDPKRNLKRLHFEASPHLLDIYPRSPHSHEDRKETIE
   WD 8  331-367    -DSTYRAVPGKGEDICRYFLNP--LLM-----PECSSTTVKKRPE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRL-----VSGSEDGTIKVWD