Input parameters:

  Query = ENSMUSP00000125049 (Len=760)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000125049, Len=760):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVT 160 
WD40-rpts                                                                                      

Query      161 GSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDS 240 
WD40-rpts                                                                                      

Query      241 DGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTP 320 
WD40-rpts                                                                                      

Query      321 TPRNDAPTPGTSTTPGLRSMPASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYAGLHNIPSQMSAAAAAAAAAYGR 400 
WD40-rpts                                                                                   (__

Query      401 SPMVSFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRHARQINTLSHGEVVCAV 480 
WD40-rpts      ____________WD 1______________)                                (________________

Query      481 TISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAEL 560 
WD40-rpts      WD 2________________)(_____________________WD 3____________________)     (______

Query      561 TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLREGRQ 640 
WD40-rpts      ___________WD 4________________)   (_________________WD 5________________)(_____

Query      641 LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 720 
WD40-rpts      _____________WD 6_________________)  (_________________WD 7________________)(___

Query      721 ASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 760 
WD40-rpts      _______________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000125049 (Len=760):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   398-431      4.87  316.01  0.00343       12.5%     28.32
  WD 2:  Seg  7   464-501      6.35  376.92  0.00052       22.5%     53.37
  WD 3:  Seg 11   502-548      7.26  414.67  0.00016       25.0%     47.86
  WD 4:  Seg 14   554-592      8.43  462.98  3.6e-05       30.0%     55.95
  WD 5:  Seg 18   596-634      9.79  519.16  6.3e-06       35.0%     55.02
  WD 6:  Seg 22   635-675      6.79  395.15  0.00029       25.0%     52.45
  WD 7:  Seg 26   678-716      8.24  454.99  4.6e-05       30.0%     53.50
  WD 8:  Seg 30   717-757      7.46  422.63  0.00013       32.5%     52.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  398-431    YGR---------------SPMVSFGAVGFDPHPPMRATGLPSSLASIPG
   WD 2  464-501    -HA-------RQINT-L-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 3  502-548    ISQPGSKSPISQLDC-L-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 4  554-592    -PR-------IKAEL-T-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 5  596-634    -QT-------LVRQF-Q-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 6  635-675    LRE-------GRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 7  678-716    -KP-------DKYQL-H-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 8  717-757    TPY-------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTL-S-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD