Input parameters:

  Query = ENSMUSP00000125032 (Len=767)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000125032, Len=767):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVT 160 
WD40-rpts                                                                                      

Query      161 GSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDS 240 
WD40-rpts                                                                               (______

Query      241 DGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTP 320 
WD40-rpts      ___________WD 1________________)                                                

Query      321 TPRNDAPTPGTSTTPGLRSMPGKPPGMDPIGIMASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYAGLHNIPSQMS 400 
WD40-rpts                                                                                      

Query      401 AAAAAAAAAYGRSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRHARQINTLSH 480 
WD40-rpts             (_____________WD 2____________)                                (_________

Query      481 GEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPT 560 
WD40-rpts      _______WD 3________________)(_____________________WD 4____________________)     

Query      561 PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSW 640 
WD40-rpts      (_________________WD 5________________)   (_________________WD 6________________

Query      641 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 720 
WD40-rpts      )(__________________WD 7_________________)  (_________________WD 8______________

Query      721 AWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 767 
WD40-rpts      __)(__________________WD 9_________________)   

9 WD40-repeats found in QUERY=ENSMUSP00000125032 (Len=767):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   234-272      2.93  235.55  0.04088       12.5%     -14.71
  WD 2:  Seg  2   408-438      4.50  300.46  0.00555       10.0%     23.59
  WD 3:  Seg  6   471-508      6.37  377.82  0.00050       22.5%     52.33
  WD 4:  Seg 10   509-555      7.47  423.34  0.00012       25.0%     47.31
  WD 5:  Seg 13   561-599      8.59  469.47  2.9e-05       30.0%     55.92
  WD 6:  Seg 17   603-641      9.87  522.44  5.7e-06       35.0%     53.85
  WD 7:  Seg 21   642-682      6.95  401.96  0.00024       25.0%     51.83
  WD 8:  Seg 25   685-723      8.41  462.19  3.7e-05       30.0%     53.30
  WD 9:  Seg 29   724-764      7.58  427.93  0.00011       32.5%     51.75

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  234-272    -SL-------SRYDS-D-GDKSDDLVVDVSNEDPATPRVSPAHSPPENG
   WD 2  408-438    ------------------AAYGRSPMVGFDPHPPMRATGLPSSLASIPG
   WD 3  471-508    -HA-------RQINT-L-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 4  509-555    ISQPGSKSPISQLDC-L-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 5  561-599    -PR-------IKAEL-T-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 6  603-641    -QT-------LVRQF-Q-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 7  642-682    LRE-------GRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 8  685-723    -KP-------DKYQL-H-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 9  724-764    TPY-------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTL-S-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD