Input parameters:

  Query = ENSMUSP00000125011 (Len=716)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000125011, Len=716):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHA 80  
WD40-rpts                                                                                      

Query       81 THGPPVQLPPHPSGLQPPGIPPVTGSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRG 160 
WD40-rpts                                                                                      

Query      161 SADYSMEAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSST 240 
WD40-rpts                                                                                      

Query      241 PSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRSMPGKPPGMDPIGIMASALRTPITLTSSYPAPFAMMSH 320 
WD40-rpts                                                                                      

Query      321 HEMNGSLTSPSAYAGLHNIPSQMSAAAAAAAAAYGRSPMVSFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADG 400 
WD40-rpts                                                              (_________________WD 1__

Query      401 QMQPVPFPHDALAGPGIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIR 480 
WD40-rpts      _______________)   (________________WD 2________________)(_____________________W

Query      481 SCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG 560 
WD40-rpts      D 3____________________)     (_________________WD 4________________)   (________

Query      561 HTDGASCIDISHDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQL 640 
WD40-rpts      _________WD 5________________)(__________________WD 6_________________)  (______

Query      641 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 716 
WD40-rpts      ___________WD 7________________)(__________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000125011 (Len=716):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   377-416      5.45  339.60  0.00165       10.0%     27.80
  WD 2:  Seg  9   420-457      6.28  373.96  0.00057       22.5%     52.26
  WD 3:  Seg 13   458-504      7.39  420.04  0.00014       25.0%     47.44
  WD 4:  Seg 16   510-548      8.50  465.90  3.3e-05       30.0%     56.05
  WD 5:  Seg 20   552-590      9.87  522.16  5.7e-06       35.0%     54.98
  WD 6:  Seg 24   591-631      6.94  401.50  0.00024       25.0%     52.30
  WD 7:  Seg 28   634-672      8.33  458.66  4.1e-05       30.0%     53.62
  WD 8:  Seg 32   673-713      7.54  426.20  0.00011       32.5%     51.13

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  377-416    GLP-------SSLAS-I-PGGKPAYSFHVSADGQMQPVPFPHDALAGPG
   WD 2  420-457    -HA-------RQINT-L-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 3  458-504    ISQPGSKSPISQLDC-L-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 4  510-548    -PR-------IKAEL-T-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 5  552-590    -QT-------LVRQF-Q-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 6  591-631    LRE-------GRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 7  634-672    -KP-------DKYQL-H-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 8  673-713    TPY-------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTL-S-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD