Input parameters:

  Query = ENSMUSP00000125007 (Len=1682)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000125007, Len=1682):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQDPERDDVTASATASASASAPASASAHYSGSSLSVRWVQGFPSQNVHFVNDQTICYPSGNFVIFINLETKKKTVLQCI 80  
WD40-rpts                                                                          (___________

Query       81 NGIVGVMATNVPSEVVAFSDRRFKPVIYIYSFPSLTRKNKLKGDILLDYTLLCFSYCGTYLASYSSLPEFELALWNWEAS 160 
WD40-rpts      ________WD 1__________________)   (__________________WD 2__________________)   (

Query      161 AILCKKSNPGMDVSQMSFNPMNWHQMCLSSSSAMSVWTIERSNQEHHFRIRSVKLPLEDATFLNEPDMLFPTTLPKDLIY 240 
WD40-rpts      _________________WD 3________________)                                          

Query      241 GPVLPLSAIAGLVGEEAETFRPKDDIYPLLHPTMHCWTPSSDLYVGCEEGHLLMINTETLKVTVLQKAEEFPLPDGAPLI 320 
WD40-rpts                                                                       (______________

Query      321 NPLTLVYQKDGILASGIDGVIYSFIIKDSKYQVKTFLEFDGPVTHLVFSPSYKMLLIQTDKGSVYIYTFGAEMPLDKLLD 400 
WD40-rpts      ___WD 4_________________)    (_________________WD 5________________)(___________

Query      401 ACDGKVQAVSFITPGTKYFLTLTSSGEVSTVSLEDCNCTSRIFLKTQATALACSPSSPTAAVGTVDGYVYFLNILDVESP 480 
WD40-rpts      ________WD 6___________________)(__________________WD 7_________________)  (____

Query      481 QMIHQAFLSQSPVKIVTYDQRGIFLLVGTEEGNIFVIDARPSKSFQIFGFTETGKDILQISTVSVMESDVVEVLVLYPLP 560 
WD40-rpts      _______________WD 8__________________)                                          

Query      561 DMGRSRLEYFTLPVMLPEVVPENFSDERGRLKDDLTHKYLYEVEHTLSSAVLGFTGSKIFGFCSQVPYICSYVMPVKEHT 640 
WD40-rpts                                                                                      

Query      641 GVLVLKPHQKVQSKQYGSGTIYLSSHGLWLMTIAKCGILCIRDMFSMETFVRCRSHSHQGRGIQNMKMSLDGQHILVNGK 720 
WD40-rpts            (________________WD 9_______________)                                     

Query      721 DDNTLVCLKWKRLGANIASEIFEHSRPLVLHLSQTVESESVYLALSRESTNEQQEETTESQKHLNSDSSEEEAVIDHKMI 800 
WD40-rpts                                                                                      

Query      801 PWIQQKMEEAIKKEVRIFSPRRKEIKRGIKELAQVIAMMMEENEKVDIIAKLDEQEFCLDADELERLHDECEEEVAKIRK 880 
WD40-rpts                                                                                      

Query      881 DVEMHNLAQSYLTELIKEECWNSMAVKGRALKCFHIPYVVDNFPMKERTEEELQELSKVMQQKKTEIECLKLRKEIVEVQ 960 
WD40-rpts                                                                                      

Query      961 ATTTIAKKHHEEEEEEEEDEERTIKTTSLPNYLLGSLSTDFGADTSLLTSQLDLHSREEKINQIILLKDIIYNIKRNFNS 1040
WD40-rpts                                                                                      

Query     1041 EFDAAYKQKEIEIARVKEKNVRIAEIISDLELEETVWQPVFEDSEKPERALVVEDDEISFKKYIAPWQRAKIKEVVSTYE 1120
WD40-rpts                                                                                      

Query     1121 MERLQQARISDERQRGLMDMMGGVLEVKKEDILRMVIPQPPFMAKADALWSEDERKQFKEYEKKVKELNEERDKYRKSLE 1200
WD40-rpts                                                                                      

Query     1201 AELKKLQNSIQESTQNFDDHLKRLFERRVKAEMVINQEELKINNIIFSLLLDEELSSREQFLNNYLLKKQEEKTKTAEAI 1280
WD40-rpts                                                                                      

Query     1281 QKAREDLDVFKEHHDMLVAEDKILDRSFKKEFSDILGHQVDVLYKLFKRRPRVHKQKTQADVTSLVPYGERPGSAKLNKE 1360
WD40-rpts                                                                                      

Query     1361 NLAQLMKSMDELDNINNMPEGLDPSVWEHFCSTRRAKVENEYKVKQKAACLLEMTTFLRKRMEEDDVVHHEIEKVFHELI 1440
WD40-rpts                                                                                      

Query     1441 RLQDEKVRFQVNLTVQILLKQGQVELENFQLMLEYSDAILINKNIIEDLNSVIRTQGQKKVASMMESKEVHKGIYQIEWE 1520
WD40-rpts                                                                                      

Query     1521 HKKMEMEMEDLNQRAWDIEMLFFSRDRQKYLNEPNYENVIAIQIGIMEQTISVIDKTHKKNVENCKKLLKKLGKYSNQKD 1600
WD40-rpts                                                                                      

Query     1601 VANYTLSCNLREELVAVSERQDICNEIGSKLTCEKIARERYDNQLKQQKLLNISKQQAEQISILQAEVERLRMKTFPALI 1680
WD40-rpts                                                                                      

Query     1681 PM 1682
WD40-rpts        

9 WD40-repeats found in QUERY=ENSMUSP00000125007 (Len=1682):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    69-111      3.75  269.61  0.01439       10.0%     50.59
  WD 2:  Seg  9   115-156      4.35  294.29  0.00672       25.0%     50.94
  WD 3:  Seg 13   160-198      6.76  393.82  0.00031       22.5%     50.45
  WD 4:  Seg 21   306-345      6.59  386.95  0.00038       10.0%     33.33
  WD 5:  Seg 23   350-388      6.56  385.77  0.00039       22.5%     49.95
  WD 6:  Seg 27   389-432      5.38  336.77  0.00180       22.5%     46.07
  WD 7:  Seg 30   433-473      5.58  345.05  0.00139       20.0%     49.99
  WD 8:  Seg 34   476-518      7.31  416.70  0.00015       30.0%     54.55
  WD 9:  Seg 46   647-683      5.89  357.87  0.00094       15.0%     40.30

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   69-111    LE---T---KKKTVLQ-CING-IVGVMAT-NVPSEVVAFSDRRFKPVIYIYS
   WD 2  115-156    -L---T---RKNK-LK-GDILLDYTLLCF-SYCGTYLASYSSLPEFELALWN
   WD 3  160-198    -S---A---ILCK-KS-NPGM-DVSQMSF-NPMNWHQMCLSS--SSAMSVWT
   WD 4  306-345    QK---A---EEFP-LP-DGAP-LINPLTL-VYQKDGILASGI--DGVIYSFI
   WD 5  350-388    -K---Y---QVKT-FL-EFDG-PVTHLVF-SPSYKMLLIQTD--KGSVYIYT
   WD 6  389-432    FGAEMP---LDKL-LD-ACDG-KVQAVSFITPGTKYFLTLTS--SGEVSTVS
   WD 7  433-473    LE---D---CNCT-SRIFLKT-QATALAC-SPSSPTAAVGTV--DGYVYFLN
   WD 8  476-518    DV---ESPQMIHQ-AF-LSQS-PVKIVTY-DQRGIFLLVGTE--EGNIFVID
   WD 9  647-683    ---------PHQK-VQ-SKQY-GSGTIYL-SSHGLWLMTIAK--CGILCIRD

   WD40 Template    TG---E---CLRT-LS-GHTS-GVTSVSF-SPDGKRLVSGSE--DGTIKVWD