Input parameters:

  Query = ENSMUSP00000124977 (Len=769)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124977, Len=769):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVT 160 
WD40-rpts                                                                                      

Query      161 GSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDS 240 
WD40-rpts                                                                              (_______

Query      241 DGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTP 320 
WD40-rpts      __________WD 1_________________)                                                

Query      321 TPRNDAPTPGTSTTPGLRSMPGKPPGMDPIASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYAGLHNIPSQMSAAA 400 
WD40-rpts                                                                                      

Query      401 AAAAAAYGRSPMVSFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRHARQINTL 480 
WD40-rpts            (______________WD 2______________)                                (_______

Query      481 SHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLAS 560 
WD40-rpts      _________WD 3________________)(_____________________WD 4____________________)   

Query      561 PTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVR 640 
WD40-rpts        (_________________WD 5________________)   (_________________WD 6______________

Query      641 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 720 
WD40-rpts      __)(__________________WD 7_________________)  (_________________WD 8____________

Query      721 LNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 769 
WD40-rpts      ____)(__________________WD 9_________________)   

9 WD40-repeats found in QUERY=ENSMUSP00000124977 (Len=769):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   233-272      4.42  297.23  0.00613       12.5%     -14.52
  WD 2:  Seg  3   407-440      4.97  320.06  0.00302       12.5%     29.33
  WD 3:  Seg  7   473-510      6.13  367.89  0.00069       22.5%     52.10
  WD 4:  Seg 11   511-557      7.30  416.04  0.00015       25.0%     47.36
  WD 5:  Seg 14   563-601      8.41  461.90  3.7e-05       30.0%     56.13
  WD 6:  Seg 18   605-643      9.84  520.96  5.9e-06       35.0%     53.71
  WD 7:  Seg 22   644-684      6.81  395.90  0.00029       25.0%     51.89
  WD 8:  Seg 26   687-725      8.31  457.80  4.2e-05       30.0%     53.61
  WD 9:  Seg 30   726-766      7.50  424.33  0.00012       32.5%     51.16

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  233-272    DSL-------SRYDS-D-GDKSDDLVVDVSNEDPATPRVSPAHSPPENG
   WD 2  407-440    YGR---------------SPMVSFGAVGFDPHPPMRATGLPSSLASIPG
   WD 3  473-510    -HA-------RQINT-L-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 4  511-557    ISQPGSKSPISQLDC-L-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 5  563-601    -PR-------IKAEL-T-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 6  605-643    -QT-------LVRQF-Q-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 7  644-684    LRE-------GRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 8  687-725    -KP-------DKYQL-H-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 9  726-766    TPY-------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTL-S-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD