Input parameters:

  Query = ENSMUSP00000124833 (Len=1233)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124833, Len=1233):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XNTQATDYLTTELCLEELERCQKTSIGPAFVALLGDQYGPCPVPRRIEEKEWEALRAQLTSRPRDLELVTRHFQRDDNTI 80  
WD40-rpts                                                                                      

Query       81 PPTYVLQPSGSLVVPGPEEATLTSVLRGGAQEAWRLGLISQEQWMCYHRSVIEWEIELGLLSSARGDQGATVFLRDVQDL 160 
WD40-rpts                                                                                      

Query      161 NKHILDDCSLKMVDRLVDGCLDTNAQSLLSGLKGRILDAQPGALKSHHLSWSRDLVNPKNKAHARYLKQLSEQFVARTNH 240 
WD40-rpts                                                                                      

Query      241 QVLEQLRELELARQELGWLYQEIRHHLWQSTESTKVFCGHQELLAQLRQQLRQDESRTHTPLVLFGPPGIGKTSLMCKLA 320 
WD40-rpts                                                                                      

Query      321 QQVPELLGHKTVVVLRLLGTSKLSLDARSLLRSLSFQVCLAYGLPLPPAQVLEAHSRVGHFFHTLLHTVSQRNFESLVLL 400 
WD40-rpts                                                                                      

Query      401 LDSVDDLDSICHSPRVSWLPLKCPPRVHLILSTCSGQQVLHNLQQTLKDPSTYWEVKALSGSQGQEFIQLLLAAEKRMLS 480 
WD40-rpts                                                                                      

Query      481 PGQRDVLWASLPECGHPGRLRLAFEEARKWASFTVPVPLATTAEEATHQLCIRLEETHGALLVAHVLGYIVSSRYGLSEA 560 
WD40-rpts                                                                                      

Query      561 ELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLGHCLVRRPVDGCMLLAIAHRQLSQVIQVRYLSGPERAK 640 
WD40-rpts                                                                                      

Query      641 RHGVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSSTVANLRKLTELPFHLLHAGRLEELKQEVLGNMSWI 720 
WD40-rpts                                                                                      

Query      721 SCRGISGGIEVLLDDFDMCAPHMNSPEVDLVREAIQLCGPAVELRGLEKSVLYTELLARLLFFAASHPAMIGQLCQQAQS 800 
WD40-rpts                                                                                      

Query      801 WFRACPYPMLVPLAGFLQPPGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGAMVVWDVEEQQVVHVLMGHTAEVKCV 880 
WD40-rpts                           (_________________WD 1________________)   (________________

Query      881 RVFAQGTLAISASKDHTLRLWSLLSGQEKVTILDGGSQNPTEPQSWDLHVDERNNVVYSTSGARINMWNLETSKLVFCIT 960 
WD40-rpts      _WD 2________________)       (_________________WD 3_________________)   (_______

Query      961 GDVSDPWVCVALLAAQGLLLALSKGGQVSLWSSAMGKLQEKHQLSSIKEETPTCAVSIQSRARLVAGFSSGSIALVSAGE 1040
WD40-rpts      __________WD 4_________________)(____________________WD 5___________________)   

Query     1041 DRLLEKLPEAVGFLVVSEDDSLLVAGFGRFVRIFLADSQGFHRFMASDLEHEDMVETAVLGPENNLIITGSRDALIQVWS 1120
WD40-rpts        (______________WD 6_____________)      (_________________WD 7________________)

Query     1121 LSEQGTLLNVLEGVGAPVSLLVRGGTLVVSASRKSSSFKVWDLKSTKKLQSPTPFLDRTGLAAVSHHGSFVYFPKVRSKI 1200
WD40-rpts          (________________WD 8________________)   (________________WD 9______________

Query     1201 AWTRPMRSAVWRWPSRPSSSSQAWFLGSCLCSP 1233
WD40-rpts      __)                              

9 WD40-repeats found in QUERY=ENSMUSP00000124833 (Len=1233):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   822-860      8.78  477.19  2.3e-05       40.0%     51.33
  WD 2:  Seg 15   864-902      9.04  488.22  1.6e-05       30.0%     55.14
  WD 3:  Seg 19   910-949      4.91  317.37  0.00329       17.5%     38.08
  WD 4:  Seg 23   953-992      6.82  396.45  0.00028       17.5%     58.81
  WD 5:  Seg 27   993-1037     6.13  367.69  0.00069       22.5%     46.44
  WD 6:  Seg 31  1043-1075     4.36  294.77  0.00662       15.0%     45.06
  WD 7:  Seg 34  1082-1120     8.26  455.95  4.5e-05       22.5%     45.24
  WD 8:  Seg 38  1125-1162     6.72  392.07  0.00032       25.0%     52.15
  WD 9:  Seg 42  1166-1203     5.57  344.77  0.00140       10.0%     43.81

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  822-860    -G----PLRATL--TGCHKG-ITAIAWSLEEK-LLVVGTQDGAMVVWD
   WD 2  864-902    -Q----QVVHVL--MGHTAE-VKCVRVFAQGT-LAISASKDHTLRLWS
   WD 3  910-949    -V----TILDGG--SQNPTE-PQSWDLHVDERNNVVYSTSGARINMWN
   WD 4  953-992    -S----KLVFCI--TGDVSDPWVCVALLAAQG-LLLALSKGGQVSLWS
   WD 5  993-1037   SAMGKLQEKHQL--SSIKEE-TPTCAVSIQSRARLVAGFSSGSIALVS
   WD 6 1043-1075   ------------LLEKLPEA-VGFLVVSEDDS-LLVAGF-GRFVRIFL
   WD 7 1082-1120   -H----RFMASD--LEHEDM-VETAVLGPENN-LIITGSRDALIQVWS
   WD 8 1125-1162   -G----TLLNVL--EGVGAP-V-SLLVRGGTL-VVSASRKSSSFKVWD
   WD 9 1166-1203   -T----KKLQSP--TPFLDR-TGLAAVSHHGS-FVYFPK-VRSKIAWT

   WD40 Template    TG----ECLRTL--SGHTSG-VTSVSFSPDGK-RLVSGSEDGTIKVWD