WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000124804 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000124804 (Len=1521) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000124804, Len=1521): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDTEREALQCTAYPEVQSFCQRHGLAFEVVDLRWGIPNTQATDYLTTELCLEELERCQKTSIGPAFVALLGDQYGPCPVP 80
WD40-rpts
Query 81 RRIEEKEWEALRAQLTSRPRDLELVTRHFQRDDNTIPPTYVLQPSGSLVVPGPEEATLTSVLRGGAQEAWRLGLISQEQW 160
WD40-rpts
Query 161 MCYHRSVIEWEIELGLLSSARGDQGATVFLRDVQDLNKHILDDCSLKMVDRLVDGCLDTNAQSLLSGLKGRILDAQPGAL 240
WD40-rpts
Query 241 KSHHLSWSRDLVNPKNKAHARYLKQLSEQFVARTNHQVLEQLRELELARQELGWLYQEIRHHLWQSTESTKVFCGHQELL 320
WD40-rpts
Query 321 AQLRQQLRQDESRTHTPLVLFGPPGIGKTSLMCKLAQQVPELLGHKTVVVLRLLGTSKLSLDARSLLRSLSFQVCLAYGL 400
WD40-rpts
Query 401 PLPPAQVLEAHSRVGHFFHTLLHTVSQRNFESLVLLLDSVDDLDSICHSPRVSWLPLKCPPRVHLILSTCSGQQVLHNLQ 480
WD40-rpts
Query 481 QTLKDPSTYWEVKALSGSQGQEFIQLLLAAEKRMLSPGQRDVLWASLPECGHPGRLRLAFEEARKWASFTVPVPLATTAE 560
WD40-rpts
Query 561 EATHQLCIRLEETHGALLVAHVLGYIVSSRYGLSEAELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLGH 640
WD40-rpts
Query 641 CLVRRPVDGCMLLAIAHRQLSQVIQVRYLSGPERAKRHGVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFS 720
WD40-rpts
Query 721 STVANLRKLTELPFHLLHAGRLEELKQEVLGNMSWISCRGISGGIEVLLDDFDMCAPHMNSPEVDLVREAIQLCGPAVEL 800
WD40-rpts
Query 801 RGLEKSVLYTELLARLLFFAASHPAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHKGITAIAWSLEE 880
WD40-rpts (_________________WD 1_
Query 881 KLLVVGTQDGAMVVWDVEEQQVVHVLMGHTAEVKCVRVFAQGTLAISASKDHTLRLWSLLSGQEKVTILDGGSQNPTEPQ 960
WD40-rpts _______________) (_________________WD 2________________) (_________________
Query 961 SWDLHVDERNNVVYSTSGARINMWNLETSKLVFCITGDVSDPWVCVALLAAQGLLLALSKGGQVSLWSSAMGKLQEKHQL 1040
WD40-rpts __WD 3__________________) (_________________WD 4_________________)(___________
Query 1041 SSIKEETPTCAVSIQSRARLVAGFSSGSIALVSAGEDRLLEKLPEAVGFLVVSEDDSLLVAGFGRFVRIFLADSQGFHRF 1120
WD40-rpts _________WD 5___________________)(________________WD 6________________) (__
Query 1121 MASDLEHEDMVETAVLGPENNLIITGSRDALIQVWDLKSTKKLQSPTPFLDRTGLAAVSHHGSFVYFPKVGDKNKVTIWD 1200
WD40-rpts _______________WD 7________________) (__________________WD 8_________________)
Query 1201 LAEGEEQDCLDTSNEVRCLEVAEQAKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSLSKSENRLAIAYDNIV 1280
WD40-rpts (__________________WD 9_________________)(___________________WD10_______________
Query 1281 LVLDISPGDPCPAIEGPTYTFYTQLPETIVSVAVLADYRVVYGMSDGSLFLYDCACSKVFPLEAHGSRVSCVEVSHSEQL 1360
WD40-rpts ___) (____________________WD11____________________) (_________________WD12___
Query 1361 AVSGAEDALLCLWDLQACRGMFEMSYENSCCRGVRCACFSRDDKHVFAGMEDRSVTAWSTVDGTLLAVQFVHAVINRIIP 1440
WD40-rpts _____________) (__________________WD13__________________) (________________W
Query 1441 TSNGFMAPTSHGYLIRERFQCPSVRASQQDPLKNFKKAVWLVKTRQREELAAAEASQDAEPVAVEGKESKSNKRSQVCLI 1520
WD40-rpts D14_______________)
Query 1521 L 1521
WD40-rpts
 14 WD40-repeats found in QUERY=ENSMUSP00000124804 (Len=1521): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 14 858-896 8.72 474.89 2.5e-05 40.0% 55.66 WD 2: Seg 18 900-938 8.79 477.68 2.3e-05 30.0% 57.35 WD 3: Seg 22 943-985 4.28 291.29 0.00737 17.5% 39.72 WD 4: Seg 26 989-1028 6.52 384.05 0.00042 17.5% 57.94 WD 5: Seg 30 1029-1073 5.76 352.76 0.00110 22.5% 50.79 WD 6: Seg 34 1074-1111 5.86 356.85 0.00097 25.0% 45.49 WD 7: Seg 37 1118-1156 8.12 449.96 5.4e-05 25.0% 50.48 WD 8: Seg 41 1160-1200 6.00 362.59 0.00081 12.5% 42.03 WD 9: Seg 44 1201-1241 6.54 384.76 0.00041 17.5% 54.56 WD10: Seg 48 1242-1284 4.60 304.85 0.00484 22.5% 49.33 WD11: Seg 52 1288-1333 5.31 333.89 0.00197 30.0% 47.69 WD12: Seg 55 1336-1374 8.27 456.11 4.4e-05 32.5% 55.28 WD13: Seg 59 1378-1419 7.22 413.04 0.00017 30.0% 56.99 WD14: Seg 63 1423-1459 3.75 269.51 0.01444 15.0% 52.01Multiple sequence alignment of 14 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 858-896 -G----P-LRATLT----GCH--------K---G-ITAIA----WSLEEK-LL--VVGTQDGAMVVWD WD 2 900-938 -Q----Q-VVHVLM----GHT--------A---E-VKCVR----VFAQGT-LA--ISASKDHTLRLWS WD 3 943-985 -Q----E-KVTILD----GGS--------Q---N-PTEPQSWDLHVDERN-NV--VYSTSGARINMWN WD 4 989-1028 -S----K-LVFCIT----GDV--------S---DPWVCVA----LLAAQG-LL--LALSKGGQVSLWS WD 5 1029-1073 SAMGKLQ-EKHQLS----SIK--------E---E-TPTCA----VSIQSRARL--VAGFSSGSIALVS WD 6 1074-1111 AG----E-D-RLLE----KLP--------E---A-VGFLV----VSEDDS-LL--VAGF-GRFVRIFL WD 7 1118-1156 -H----R-FMASDL----EHE--------D---M-VETAV----LGPENN-LI--ITGSRDALIQVWD WD 8 1160-1200 -T----K-KLQSPT----PFL--------D---R-TGLAA----VSHHGS-FVYFPKVGDKNKVTIWD WD 9 1201-1241 LA----EGEEQDCL----DTS--------N---E-VRCLE----VAEQAK-LL--FTGLVSGIVLVFP WD10 1242-1284 LN----S-RQDVLCIPPPEAR--------K---A-VNCMS----LSKSEN-RL--AIAY-DNIVLVLD WD11 1288-1333 -G----D-PCPAIE----GPTYTFYTQLPE---T-IVSVA----VLADY--RV--VYGMSDGSLFLYD WD12 1336-1374 -C----S-KVFPLE----AHG--------S---R-VSCVE----VSHSEQ-LA--VSGAEDALLCLWD WD13 1378-1419 -C----R-GMFEMS----YEN--------SCCRG-VRCAC----FSRDDK-HV--FAGMEDRSVTAWS WD14 1423-1459 -G----T-LLAVQF----VHA--------V-----INRII----PTSNG--FM--APTSHGYLIRERF WD40 Template TG----E-CLRTLS----GHT--------S---G-VTSVS----FSPDGK-RL--VSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |