Input parameters:

  Query = ENSMUSP00000124727 (Len=1314)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124727, Len=1314):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XEWRPDSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSPQMKGIPHFKEEHCAPALNLEMKKILDLQAPIMSLQSV 80  
WD40-rpts                                                                                      

Query       81 LEDLLVATSDGLLHLIHWEGMTNGRKAINLSTVPFSVDLQSSRVGSFLGFADVHIKDMEYCATLDGFAVVFNDGKVGFIT 160 
WD40-rpts                                                                                      

Query      161 PVSSRFTAEQLHGVWPQDVIDGTCVAVNNKYRLMAFGCASGCVQVYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKL 240 
WD40-rpts       (____________________WD 1____________________)                 (_______________

Query      241 IRWSPDNSAVIVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISGLGSQHTQIETDL 320 
WD40-rpts      __WD 2________________)                                                         

Query      321 RSTVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQAQNPKYSSARAERMPRHEKSPFADGGLEAPGL 400 
WD40-rpts                                                                                      

Query      401 STLLGHRHWHVVQISSTYLESNWPIREQNMIVTGGLAWWDDFMVLACYNLSDRQEELRIYLRTSNLDNAFAHVTKAPMET 480 
WD40-rpts                                                                                      

Query      481 LLLSVFRDMVVVFRADCSICLYSIERKSDGSNTTASVQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGISLKMPQQARDA 560 
WD40-rpts                                                                                      

Query      561 ESIMLNLAGQLIMMQRDRSGPQIREKDSHPNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEALWLSCGGAGMKVW 640 
WD40-rpts                                                                                      

Query      641 LPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRSSAREQLEVLFPFCVVERTSQIYLH 720 
WD40-rpts                                                                                      

Query      721 HILRQLLVRNLGEQALLLAQSCAALPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTE 800 
WD40-rpts                                                                                      

Query      801 YALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGE 880 
WD40-rpts                                                                                      

Query      881 SETPPSTPTSQEPSSSGGFEFFRNRSISLSQSAENVPPGKFGLQKTLSMPTGPSGKRWSKDSECAENMYIDMMLWRHARR 960 
WD40-rpts                                                                                      

Query      961 LLEEVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVVALKRLHKDFLWPLPIIPASSISSPFKNGKCRAVGEQMLKS 1040
WD40-rpts                                                                                      

Query     1041 QSADPFITPEMDAGISNIQRSQSWLSNIGPTHRDTDRASSPGPQMQDAFLSPLSNKGDECSIGSATDLTESSSVVDGDWT 1120
WD40-rpts                                                                                      

Query     1121 MVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCLDWCVVIGLILRESSVVSQLLGIAQSSEMDGEM 1200
WD40-rpts                                                                                      

Query     1201 LQNIKSGLQAVDRWASTDCPGYKPFLNIIKPQLQKLSEITEELVQPDTFQPVTVGKTPEQTSPRAEENRGSCSHGSISQS 1280
WD40-rpts                                                                                      

Query     1281 EPGSNNVVSRKEEDTTQADEEEPLQDGAYDCSVS 1314
WD40-rpts                                        

2 WD40-repeats found in QUERY=ENSMUSP00000124727 (Len=1314):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   162-207      2.89  233.88  0.04301       15.0%     43.17
  WD 2:  Seg 14   225-263      4.71  309.42  0.00420       20.0%     37.30

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  162-207    VSSRFTAEQLHGVWPQDVIDGTCVAVNNKYRLMAFGCASGCVQVYT
   WD 2  225-263    -AKQYPDIWNK------TGAVKLIRWSPDNSAVIVTWEYGGLSLWS

   WD40 Template    TGECLRTLSGH------TSGVTSVSFSPDGKRLVSGSEDGTIKVWD