Input parameters:
Query = ENSMUSP00000124675 (Len=102)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (ENSMUSP00000124675, Len=102):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MYESPSTLLSCGYDTYVRYWDLRTSTRKCVMEWEEPHDSTFYCLQTDGNHLLATGSSYYGLVRLWDRRQRACLHAFSLTS 80
WD40-rpts (________WD 1_______)(____________________WD 2___________________)
Query 81 TPLSSPVYCLRFTTRHLYAALS 102
WD40-rpts
2 WD40-repeats found in QUERY=ENSMUSP00000124675 (Len=102):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-21 2.81 230.68 0.04740 12.5% 27.49
WD 2: Seg 3 22-66 7.17 410.86 0.00018 15.0% 56.55
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-21 ------------------------MYESPSTLLSCGYDTYVRYWD
WD 2 22-66 LRTSTRKCVMEWEEPHDSTFYCLQTDGNHLLATGSSYYGLVRLWD
WD40 Template TGE-----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD