Input parameters:

  Query = ENSMUSP00000124592 (Len=641)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124592, Len=641):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQANGAGGGGGGGGGGQGQTPELACLSAQNGESSPSATSAGDLAHANGLLPAAPSAAGNNSNSLSVNNGVPGGAAAASAT 80  
WD40-rpts                                                                                      

Query       81 AAAAQATPELGSSLKKKKRLSQSDEDVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLN 160 
WD40-rpts                                                                                      

Query      161 ELKPLVHSPHAIVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCS 240 
WD40-rpts                                                                                      

Query      241 HAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSR 320 
WD40-rpts                                                                                      

Query      321 RQFPCYTQQILTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDSYLVACG 400 
WD40-rpts          (_________________WD 1________________)       (__________________WD 2_______

Query      401 PDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKTV 480 
WD40-rpts      __________)   (_________________WD 3_________________)  (________________WD 4___

Query      481 LASDTHQRVRGYNFEDLTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGG 560 
WD40-rpts      ____________)(__________________WD 5_________________)   (__________________WD 6

Query      561 HNEDFIASGSEDHKVYIWHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMD 640 
WD40-rpts      __________________)   (_________________WD 7_________________)                  

Query      641 S 641 
WD40-rpts       

7 WD40-repeats found in QUERY=ENSMUSP00000124592 (Len=641):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   325-363      8.69  473.43  2.6e-05       32.5%     49.36
  WD 2:  Seg  6   371-411      7.81  437.42  7.9e-05       35.0%     51.11
  WD 3:  Seg 10   415-454      7.93  442.29  6.8e-05       40.0%     55.93
  WD 4:  Seg 14   457-493      5.89  357.96  0.00093       17.5%     52.57
  WD 5:  Seg 18   494-534      6.63  388.44  0.00036       15.0%     52.35
  WD 6:  Seg 22   538-579      6.79  395.14  0.00029       27.5%     53.48
  WD 7:  Seg 26   583-622      8.52  466.71  3.2e-05       35.0%     52.75

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  325-363    -CYTQ-QILT-EHCNE---VWFCKFSND-GTKLATGSKDTT--VIIWQ
   WD 2  371-411    -LKLL-KTLE-GHAYG---VSYIAWSPD-DSYLVACGPDDCSELWLWN
   WD 3  415-454    -GELR-TKMSQSHEDS---LTSVAWNPD-GKRFVTGGQRGQ--FYQCD
   WD 4  457-493    -GNLL-DSWE-GVR-----VQCLWCLSD-GKTVLASDTHQR--VRGYN
   WD 5  494-534    FEDLTDRNIV-QEDHP---IMSFTISKN-GRLALLNVATQG--VHLWD
   WD 6  538-579    -RVLV-RKYQ-GVTQGFYTIHSCFGGHN-EDFIASGSEDHK--VYIWH
   WD 7  583-622    -ELPI-AELT-GHTRT---VNCVSWNPQIPSMMASASDDGT--VRIWG

   WD40 Template    TGECL-RTLS-GHTSG---VTSVSFSPD-GKRLVSGSEDGT--IKVWD