Input parameters:

  Query = ENSMUSP00000124557 (Len=762)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124557, Len=762):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNT 80  
WD40-rpts                                                                                      

Query       81 ILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVTGSSSGLL 160 
WD40-rpts                                                                                      

Query      161 ALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDSDGDKSDD 240 
WD40-rpts                                                                                      

Query      241 LVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAP 320 
WD40-rpts                                                                                      

Query      321 TPGTSTTPGLRSMPGKPPGMDPIASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYAGLHNIPSQMSAAAAAAAAAY 400 
WD40-rpts                                                                                     (

Query      401 GRSPMVSFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRHARQINTLSHGEVVC 480 
WD40-rpts      ______________WD 1______________)                                (______________

Query      481 AVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKA 560 
WD40-rpts      __WD 2________________)(_____________________WD 3____________________)     (____

Query      561 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLREG 640 
WD40-rpts      _____________WD 4________________)   (_________________WD 5________________)(___

Query      641 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 720 
WD40-rpts      _______________WD 6_________________)  (_________________WD 7________________)(_

Query      721 YGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 762 
WD40-rpts      _________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000124557 (Len=762):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   400-433      4.91  317.67  0.00326       12.5%     29.52
  WD 2:  Seg  7   466-503      6.12  367.49  0.00069       22.5%     52.20
  WD 3:  Seg 11   504-550      7.31  416.50  0.00015       25.0%     47.94
  WD 4:  Seg 14   556-594      8.45  463.70  3.5e-05       30.0%     56.35
  WD 5:  Seg 18   598-636      9.85  521.56  5.8e-06       35.0%     54.05
  WD 6:  Seg 22   637-677      6.84  397.18  0.00028       25.0%     52.17
  WD 7:  Seg 26   680-718      8.32  458.25  4.1e-05       30.0%     52.51
  WD 8:  Seg 30   719-759      7.50  424.29  0.00012       32.5%     54.35

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  400-433    YGR--------------SPMVSFGAVGFDPHPPMRATGLPSSLASIPG
   WD 2  466-503    -HA-------RQINTL-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 3  504-550    ISQPGSKSPISQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 4  556-594    -PR-------IKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 5  598-636    -QT-------LVRQFQ-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 6  637-677    LRE-------GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 7  680-718    -KP-------DKYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 8  719-759    TPY------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD