Input parameters:

  Query = ENSMUSP00000124186 (Len=625)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124186, Len=625):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQANGAGGGGGGGGGGQGQTPELACLSAQNGESSPSATSAGDLAHANGLLPAAPSAAGNNSNSLSVNNGVPGGAAAASAT 80  
WD40-rpts                                                                                      

Query       81 AAAAQATPELGSSLKKKKRLSQSDEDVIRLIGQHLNGLGLNQTVDLLMQESGCRLEHPSATKFRNHVMEGDWDKAENDLN 160 
WD40-rpts                                                                                      

Query      161 ELKPLVHSPHAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTERIHVLSGYLMCSHAEDLRAKAEWEGKGT 240 
WD40-rpts                                                                                      

Query      241 ASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQAVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCN 320 
WD40-rpts                                                                          (___________

Query      321 EVWFCKFSNDGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDSYLVACGPDDCSELWLWNVQTGE 400 
WD40-rpts      ______WD 1________________)       (__________________WD 2_________________)   (_

Query      401 LRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKTVLASDTHQRVRGYNFED 480 
WD40-rpts      ________________WD 3_________________)  (________________WD 4_______________)(__

Query      481 LTDRNIVQEDHPIMSFTISKNGRLALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVY 560 
WD40-rpts      ________________WD 5_________________)   (__________________WD 6________________

Query      561 IWHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEECSSMDS 625 
WD40-rpts      __)   (_________________WD 7_________________)                   

7 WD40-repeats found in QUERY=ENSMUSP00000124186 (Len=625):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   309-347      8.75  475.90  2.4e-05       32.5%     51.00
  WD 2:  Seg  6   355-395      7.92  441.70  6.9e-05       35.0%     49.67
  WD 3:  Seg 10   399-438      8.17  452.25  5.0e-05       40.0%     56.91
  WD 4:  Seg 14   441-477      6.19  370.23  0.00064       17.5%     52.82
  WD 5:  Seg 18   478-518      6.94  401.47  0.00024       15.0%     53.97
  WD 6:  Seg 22   522-563      6.97  402.60  0.00023       27.5%     53.42
  WD 7:  Seg 26   567-606      8.59  469.62  2.9e-05       35.0%     52.94

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  309-347    -CYTQ-QILT-EHCNE---VWFCKFSND-GTKLATGSKDTT--VIIWQ
   WD 2  355-395    -LKLL-KTLE-GHAYG---VSYIAWSPD-DSYLVACGPDDCSELWLWN
   WD 3  399-438    -GELR-TKMSQSHEDS---LTSVAWNPD-GKRFVTGGQRGQ--FYQCD
   WD 4  441-477    -GNLL-DSWE-GVR-----VQCLWCLSD-GKTVLASDTHQR--VRGYN
   WD 5  478-518    FEDLTDRNIV-QEDHP---IMSFTISKN-GRLALLNVATQG--VHLWD
   WD 6  522-563    -RVLV-RKYQ-GVTQGFYTIHSCFGGHN-EDFIASGSEDHK--VYIWH
   WD 7  567-606    -ELPI-AELT-GHTRT---VNCVSWNPQIPSMMASASDDGT--VRIWG

   WD40 Template    TGECL-RTLS-GHTSG---VTSVSFSPD-GKRLVSGSEDGT--IKVWD