Input parameters:

  Query = ENSMUSP00000124173 (Len=772)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124173, Len=772):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVT 160 
WD40-rpts                                                                                      

Query      161 GSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDS 240 
WD40-rpts                                                                                      

Query      241 DGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTP 320 
WD40-rpts                                                                                      

Query      321 TPRNDAPTPGTSTTPGLRSMPGKPPGMDPIGIMASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYAGLHNIPSQMS 400 
WD40-rpts                                                                                      

Query      401 AAAAAAAAAYGRSPMVSFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPGIPRHARQI 480 
WD40-rpts               (______________WD 1______________)                                (____

Query      481 NTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWD 560 
WD40-rpts      ____________WD 2________________)(_____________________WD 3____________________)

Query      561 LASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDN 640 
WD40-rpts           (_________________WD 4________________)   (_________________WD 5___________

Query      641 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 720 
WD40-rpts      _____)(__________________WD 6_________________)  (_________________WD 7_________

Query      721 DNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 772 
WD40-rpts      _______)(__________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000124173 (Len=772):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   410-443      5.10  325.32  0.00257       12.5%     27.06
  WD 2:  Seg  7   476-513      6.24  372.25  0.00060       22.5%     51.50
  WD 3:  Seg 11   514-560      7.35  418.42  0.00014       25.0%     47.11
  WD 4:  Seg 14   566-604      8.49  465.54  3.3e-05       30.0%     56.11
  WD 5:  Seg 18   608-646      9.86  521.77  5.8e-06       35.0%     53.54
  WD 6:  Seg 22   647-687      6.86  398.12  0.00027       25.0%     52.05
  WD 7:  Seg 26   690-728      8.31  458.12  4.2e-05       30.0%     53.61
  WD 8:  Seg 30   729-769      7.49  423.89  0.00012       32.5%     53.22

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  410-443    YGR--------------SPMVSFGAVGFDPHPPMRATGLPSSLASIPG
   WD 2  476-513    -HA-------RQINTL-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 3  514-560    ISQPGSKSPISQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 4  566-604    -PR-------IKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 5  608-646    -QT-------LVRQFQ-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 6  647-687    LRE-------GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 7  690-728    -KP-------DKYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 8  729-769    TPY------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD