Input parameters:

  Query = ENSMUSP00000124150 (Len=702)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124150, Len=702):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 YYEMSYGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGVRGLPNLPLTQQQLQAQHL 80  
WD40-rpts                                                                                      

Query       81 SHATHGPPVQLPPHPSGLQPPGIPPVTGSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEK 160 
WD40-rpts                                                                                      

Query      161 HRGSADYSMEAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASS 240 
WD40-rpts                                                                                      

Query      241 SSTPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRSMPASALRTPITLTSSYPAPFAMMSHHEMNGSLTS 320 
WD40-rpts                                                                                      

Query      321 PSAYAGLHNIPSQMSAAAAAAAAAYGRSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAG 400 
WD40-rpts                            (_____________WD 1____________)                           

Query      401 PGIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVG 480 
WD40-rpts           (________________WD 2________________)(_____________________WD 3___________

Query      481 GEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDG 560 
WD40-rpts      _________)     (_________________WD 4________________)   (_________________WD 5_

Query      561 TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAY 640 
WD40-rpts      _______________)(__________________WD 6_________________)  (_________________WD 

Query      641 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 702 
WD40-rpts      7________________)(__________________WD 8_________________)   

8 WD40-repeats found in QUERY=ENSMUSP00000124150 (Len=702):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   343-373      4.56  303.16  0.00510       10.0%     22.76
  WD 2:  Seg  6   406-443      6.45  380.91  0.00046       22.5%     52.07
  WD 3:  Seg 10   444-490      7.59  428.09  0.00011       25.0%     48.26
  WD 4:  Seg 13   496-534      8.62  470.59  2.8e-05       30.0%     55.76
  WD 5:  Seg 17   538-576      9.89  523.31  5.5e-06       35.0%     54.49
  WD 6:  Seg 21   577-617      7.04  405.34  0.00021       25.0%     52.52
  WD 7:  Seg 25   620-658      8.44  463.40  3.5e-05       30.0%     53.13
  WD 8:  Seg 29   659-699      7.57  427.38  0.00011       32.5%     52.12

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  343-373    ------------------AAYGRSPMVGFDPHPPMRATGLPSSLASIPG
   WD 2  406-443    -HA-------RQINT-L-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 3  444-490    ISQPGSKSPISQLDC-L-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 4  496-534    -PR-------IKAEL-T-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 5  538-576    -QT-------LVRQF-Q-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 6  577-617    LRE-------GRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 7  620-658    -KP-------DKYQL-H-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 8  659-699    TPY-------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTL-S-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD