Input parameters:

  Query = ENSMUSP00000124134 (Len=1238)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124134, Len=1238):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDAKARNCLLQHREALEKDIKTSYIMDHMISNGVLSVIEEEKVKSQATQYQRAAALIKMILNKDNCAYISFYNALLHEGY 80  
WD40-rpts                                                                                      

Query       81 KDLAALLQSGLPLVSSSSVRTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDH 160 
WD40-rpts                                                                                      

Query      161 SLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVL 240 
WD40-rpts                                                                                      

Query      241 KAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALL 320 
WD40-rpts                                                                                      

Query      321 RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEV 400 
WD40-rpts                                                                                      

Query      401 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHM 480 
WD40-rpts                                                                                      

Query      481 ASANMHKELCALMFSLDWIKAKTELVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLLGRQPFPNIVQLGLCEP 560 
WD40-rpts                                                                                      

Query      561 ETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL 640 
WD40-rpts                                          (_______________WD 1_______________)   (____

Query      641 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 720 
WD40-rpts      _____________WD 2________________)   (__________________WD 3_________________)  

Query      721 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD 800 
WD40-rpts       (_________________WD 4________________)           (___________________WD 5_____

Query      801 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 880 
WD40-rpts      ______________)   (_________________WD 6________________)   (_________________WD

Query      881 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 960 
WD40-rpts       7________________)(_________________WD 8_________________)(_________________WD 

Query      961 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR 1040
WD40-rpts      9________________)   (_________________WD10________________)  (________________W

Query     1041 LLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVR 1120
WD40-rpts      D11________________)   (_________________WD12________________)   (______________

Query     1121 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSS 1200
WD40-rpts      ___WD13________________)          (_________________WD14________________)   (___

Query     1201 QTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVLE 1238
WD40-rpts      ______________WD15________________)   

15 WD40-repeats found in QUERY=ENSMUSP00000124134 (Len=1238):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   597-632      7.67  431.52  9.5e-05       30.0%     50.58
  WD 2:  Seg 17   636-674      9.35  500.92  1.1e-05       32.5%     56.92
  WD 3:  Seg 21   678-718      8.03  446.54  6.0e-05       30.0%     54.86
  WD 4:  Seg 25   722-760     10.43  545.40  2.8e-06       47.5%     55.97
  WD 5:  Seg 30   772-815      6.03  363.66  0.00078       12.5%     39.54
  WD 6:  Seg 33   819-857      8.31  458.07  4.2e-05       22.5%     54.37
  WD 7:  Seg 37   861-899      9.70  515.21  7.1e-06       40.0%     57.06
  WD 8:  Seg 41   900-939      7.21  412.33  0.00017        7.5%     47.30
  WD 9:  Seg 43   940-978      7.14  409.53  0.00019       25.0%     48.59
  WD10:  Seg 47   982-1020     9.62  511.84  7.9e-06       37.5%     57.74
  WD11:  Seg 51  1023-1060     7.02  404.55  0.00022       35.0%     51.85
  WD12:  Seg 55  1064-1102     9.07  489.32  1.6e-05       32.5%     57.32
  WD13:  Seg 59  1106-1144     9.40  503.10  1.0e-05       35.0%     57.12
  WD14:  Seg 64  1155-1193     6.38  378.15  0.00050       37.5%     40.83
  WD15:  Seg 67  1197-1235     7.47  423.12  0.00012       17.5%     55.35

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  597-632    ----RLV----VRPHTDAVYHACFSQDGQR--IASCGADKTLQVFK
   WD 2  636-674    -GEKLLD----IKAHEDEVLCCAFSSDDSY--IATCSADKKVKIWD
   WD 3  678-718    -GKLVHT----YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD
   WD 4  722-760    -KECRNT----MFGHTNSVNHCRFSPDDEL--LASCSADGTLRLWD
   WD 5  772-815    VKRFFLSSEDPPEDVEVIVKCCSWSADGDK--IIVAAKNKVLLFDI
   WD 6  819-857    -GLLAEI----HTGHHSTIQYCDFSPYDHL--AVIALSQYCVELWN
   WD 7  861-899    -RLKVAD----CRGHLSWVHGVMFSPDGSS--FLTASDDQTIRVWE
   WD 8  900-939    TKKVCKN----SAIVLKQEIDVVFQENETM--VLAVDNIRGLQLIA
   WD 9  940-978    -GKTGQI----DYLPEAQVSCCCLSPHLEY--VAFGDEDGAIKIIE
   WD10  982-1020   -NRVFSS----GVGHKKAVRHIQFTADGKT--LISSSEDSVIQVWN
   WD11 1023-1060   -TGDYVF----LQAHQETVKDFRLLQDS-R--LLSWSFDGTVKVWN
   WD12 1064-1102   -GRIERD----FTCHQGTVLSCAISSDATK--FSSTSADKTAKIWS
   WD13 1106-1144   -LSPLHE----LKGHNGCVRCSAFSLDGIL--LATGDDNGEIRIWN
   WD14 1155-1193   APISVEE---GTATHGGWVTDVCFSPDSKT--LVSAG--GYLKWWN
   WD15 1197-1235   -GDSSQT----FYTNGTNLKKIHVSPDFRT--YVTVDNLGILYILQ

   WD40 Template    TGECLRT----LSGHTSGVTSVSFSPDGKR--LVSGSEDGTIKVWD