Input parameters:

  Query = ENSMUSP00000124131 (Len=782)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000124131, Len=782):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTE 80  
WD40-rpts                                                                                      

Query       81 IAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGVRGLPNLPLTQQQLQAQHLSHATHGPPVQLPPHPSG 160 
WD40-rpts                                                                                      

Query      161 LQPPGIPPVTGSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRGSADYSMEAKKRKAE 240 
WD40-rpts                                                                                      

Query      241 EKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKS 320 
WD40-rpts        (_________________WD 1_________________)                                      

Query      321 STPGLKSNTPTPRNDAPTPGTSTTPGLRSMPGKPPGMDPIGIMASALRTPITLTSSYPAPFAMMSHHEMNGSLTSPSAYA 400 
WD40-rpts                                                                                      

Query      401 GLHNIPSQMSAAAAAAAAAYGRSPMVSFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAG 480 
WD40-rpts                        (_______________WD 2______________)                           

Query      481 PGIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVG 560 
WD40-rpts           (________________WD 3________________)(_____________________WD 4___________

Query      561 GEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDG 640 
WD40-rpts      _________)     (_________________WD 5________________)   (_________________WD 6_

Query      641 TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAY 720 
WD40-rpts      _______________)(__________________WD 7_________________)  (_________________WD 

Query      721 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 782 
WD40-rpts      8________________)(__________________WD 9_________________)   

9 WD40-repeats found in QUERY=ENSMUSP00000124131 (Len=782):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   243-282      3.99  279.51  0.01061       12.5%     -15.58
  WD 2:  Seg  3   419-453      5.36  336.16  0.00183       10.0%     24.60
  WD 3:  Seg  7   486-523      6.30  374.94  0.00055       22.5%     50.42
  WD 4:  Seg 11   524-570      7.45  422.20  0.00013       25.0%     47.15
  WD 5:  Seg 14   576-614      8.57  468.67  3.0e-05       30.0%     56.31
  WD 6:  Seg 18   618-656      9.87  522.57  5.6e-06       35.0%     53.80
  WD 7:  Seg 22   657-697      6.97  402.65  0.00023       25.0%     51.87
  WD 8:  Seg 26   700-738      8.40  461.81  3.7e-05       30.0%     53.67
  WD 9:  Seg 30   739-779      7.56  426.80  0.00011       32.5%     52.78

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  243-282    DSL-------SRYDSD-GDKSDDLVVDVSNEDPATPRVSPAHSPPENG
   WD 2  419-453    ------------AYGR-SPMVSFGAVGFDPHPPMRATGLPSSLASIPG
   WD 3  486-523    -HA-------RQINTL-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 4  524-570    ISQPGSKSPISQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 5  576-614    -PR-------IKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 6  618-656    -QT-------LVRQFQ-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 7  657-697    LRE-------GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 8  700-738    -KP-------DKYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 9  739-779    TPY------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD