WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000124056 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000124056 (Len=2688) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000124056, Len=2688): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAARERLFELWMLYCTKKDPDYLRLWLDNFVLSYEQFLDVDFEKLPTRVDDMPPGISLLPDNILQVLRIQLLHCVQKTAD 80
WD40-rpts
Query 81 GLEEQQQALSILLVKFFIILCRNLSNVEEIGTCSYINHVITMTTLYIQQLKSKKKEKEMADQTSIEEFVIHALAFCESLY 160
WD40-rpts
Query 161 DPYRNWRHRISGRILSSVEKSRQKYKPASLTVEFVPFFYQCFQESEHLKDSLKCCLLHLFGAIVAGGQRNALQAISPATM 240
WD40-rpts
Query 241 EVLMRVLSDCDSWEEGDPEEVGRKRELTLKCLTQVVHILLTSSSDQRQVETSTILENYFKLLNSDHSALPKQGRSRRWES 320
WD40-rpts
Query 321 QFIALQIKMLNTITSMLDCTDRPVLQAIFLNSNCFEHLIRLLQNCKVFQGQLDCLAVSAIQALTAVMKSSPAAKEVFKER 400
WD40-rpts
Query 401 IGYMHMFEVLKSLGQPPQELLKELMNMAVEGDHTSVGILGISNVQPLLVLIQWLPELESHDLQIFVSDWLKKICCINKQS 480
WD40-rpts
Query 481 RTTCVNANMGIKIIEALESHSSLHRTCAENLIAIHGSLGSQSVSSEEIRRLLRLLRVDESECIHPYTIPVTRAVLTMARK 560
WD40-rpts
Query 561 LSFESALQYFNLSHSMAGISVPAIQRWPGSAFSFTAWFCLDQDPLTLGSANKGGKRKQLYSFFTGSGMGFEAFITHSGVL 640
WD40-rpts
Query 641 VVAVCTKREYATVMLPDHSFCDSLWHNITIVHMPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTT 720
WD40-rpts
Query 721 TPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTIEKSKLFTKLISAGTQDSEWGCPTSLEGQLGSVIIFHEALQPPQV 800
WD40-rpts
Query 801 KALYLAGPNCLSPWKCQDCDMADLPSNILLHYTGKACKNSICLDLSANCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPL 880
WD40-rpts
Query 881 LEQISHFSEGQTSEAMSENTVPELVTPSEQECMGLASTRASESRLEKNLIATFILIVKHFIQRHPINQDNLIQSHGVATL 960
WD40-rpts
Query 961 GALLQKVPGSQMDVNVLMAIQLLIEQVSLEKNTLLLQQMYQCLLFDFRIWNRGDFPFQIGHIQYLSTIIKDSRRVFRKKY 1040
WD40-rpts
Query 1041 GVQFLLDTLRIYYGHGSTCNELSPDDIRTIRTSLYGLIKYFLCKGGTHEEIQSIIGYIAATNEEEQLFGILDILFSLLRT 1120
WD40-rpts
Query 1121 SPTRGQLFLLLFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGIGLLLNEAPVNTS 1200
WD40-rpts
Query 1201 LIKNLVNQIINTDPVINFKDLLSVVYICHRTHVNVRVVLCRKILQILQSQPDAAYQISQQVGWQDTFVRLFLKANFENVN 1280
WD40-rpts
Query 1281 SLNKHGKTVSMKENKNMSTEDVKRNFEKLDDEKMMLADVSSDHWSLEDSQSLNSNTPLFQEDSSEGELSFKSENQEEFWH 1360
WD40-rpts
Query 1361 SNTSHLSLDLSGIDACELSDSGSQVPDSSPSTPSPVESTKSFSLQSDKERSITNEMGFSDDFSFLESQERCEEELFQLLT 1440
WD40-rpts
Query 1441 NILNYVMCKGLEKSDEDTWIERGQVFSALTKPGISSELLRPSDEVKLTLLQKMLEWAITENRDAKSSPVTAENAFRLMLI 1520
WD40-rpts
Query 1521 VQDFLQSEGLVNSNMWTEKLLEDATQLLDCLSVWYSENPAWVKLSQIQTQLLLEFIGRGSLQVCAMASAKLNALLQTKVI 1600
WD40-rpts
Query 1601 ENQDEACYILGKLEHILSRSIKEQTEIYSFLIPLLRTLVSKIYELLFMNLHLPSLPFTNGSASFFEDFQEYCNSEEWQVY 1680
WD40-rpts
Query 1681 IEKYIVPYMKQYEAHTFYDGHENMALYWKNCYEALMVNMHKRDREGGESKLKFQEYFVEPFNRKARQENLRYNNMIKQLN 1760
WD40-rpts
Query 1761 SQQLAAVRRWKAIRLYLTCERGPWAEKKQNRIHWKLANVENYSRMRLKLVPNYNFKTHEEASALRDNLGVQHLQPSSDSL 1840
WD40-rpts
Query 1841 LLEVVKQVKLSDMEEDKLELLEEDMAARVNIDEKEEQNQKEKLVLTEDCELITVIDIIPGRLEVTTQHIYFHDNSVEKED 1920
WD40-rpts
Query 1921 GLGFDFKWPHSQIREIHLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKIYSRLLSLHSPTGYGTRSPQELFKASGLTQK 2000
WD40-rpts
Query 2001 WVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMREKYENFEDP 2080
WD40-rpts
Query 2081 MGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLE 2160
WD40-rpts
Query 2161 NQNEFNLGHLQVSKELVNDVILPRWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEG 2240
WD40-rpts
Query 2241 AVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAIQKQTKTEISTLNLFQHLTELKSFFIEGISDGIPLL 2320
WD40-rpts
Query 2321 KAIIPKNQSRSFMSQGSPELLITVSMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTISGPFAPGLEITSKLFVV 2400
WD40-rpts
Query 2401 SHDAKLLFSAGHWDNSIQVMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLAPKPFQ 2480
WD40-rpts (_________________WD 1________________) (____
Query 2481 ILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTVQKGQYMRTLRLPCESSLFLTIPSLAISWEGHIVVYSSLEEKSVLK 2560
WD40-rpts _____________WD 2________________)
Query 2561 DKNLLHLFSINGKYLGSQVLSEQISDMCIIGEHIITGSLQGLLSIRELHSLKLSVTPLAMRLPIHCVSITKEYSHILVGL 2640
WD40-rpts (_________________WD 3________
Query 2641 EDGKLIVVGVGKPAEMRSGQLSRKLWGSSKRLSQISAGETEYNTQDCK 2688
WD40-rpts ________)
 3 WD40-repeats found in QUERY=ENSMUSP00000124056 (Len=2688): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 30 2425-2463 6.42 379.85 0.00047 30.0% 55.37 WD 2: Seg 34 2476-2514 5.25 331.49 0.00212 35.0% 55.08 WD 3: Seg 47 2611-2649 3.79 271.36 0.01364 20.0% 48.31Multiple sequence alignment of 3 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2425-2463 GKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQ WD 2 2476-2514 PKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHT WD 3 2611-2649 LKLSVTPLAMRLPIHCVSITKEYSHILVGLEDGKLIVVG WD40 Template GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |