Input parameters:

  Query = ENSMUSP00000123865 (Len=1419)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000123865, Len=1419):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTVVVHVDSKAELTTLLEQWEKDHGSGQDMVPILTRMSELIEKETEEYRKGDPDPFDDRHPGRADPECMLGHLLRILFK 80  
WD40-rpts                                                                                      

Query       81 NDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDI 160 
WD40-rpts                                                                                      

Query      161 AANYRDENSQLVAIVLRRLRELQLQEVALRQDSKRPSPRKLSSEPLLPLDEEAVDMDYGDMAVDVVDGEQESSRDMEISF 240 
WD40-rpts                                                                                      

Query      241 RLDSSHKTSSRVNSATKPEEGGLKKNKSAKHGDRENFRKAKQKLGFSSSDPDRVFVELSNSSWSEMSPWVIGTNYTLYPM 320 
WD40-rpts                                                                                      

Query      321 TPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMFYIDLKQTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLL 400 
WD40-rpts                                                                                      

Query      401 EIPRPSMAATGVSMCLYYLSYNQDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRYD 480 
WD40-rpts                                                                                      

Query      481 GLRRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKAC 560 
WD40-rpts                                                                                      

Query      561 SYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLLLQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQLA 640 
WD40-rpts                                                                                      

Query      641 ESVDVLDEAGSAVSTVGISIILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLSQTPKSSEHT 720 
WD40-rpts                                                                                      

Query      721 LAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPLFSSCQIQQLMKEPVLQDKRSD 800 
WD40-rpts                                                                                      

Query      801 HVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQSRISFPEKELLLLIRNHLISKGLGETATVLTREADLPMTAA 880 
WD40-rpts                                                                                      

Query      881 SHSSAFTPVTAAASPVSLPRTPRIANGIASRLGSHATVGASAPSAPPAHPPPRPPQGSLPLPGPSYAGNSPLIGRISFIR 960 
WD40-rpts                                                                                      

Query      961 ERPSPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPK 1040
WD40-rpts                                                                                      

Query     1041 QRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYN 1120
WD40-rpts                                               (_________________WD 1________________)

Query     1121 VFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIAH 1200
WD40-rpts         (__________________WD 2_________________)(_________________WD 3______________

Query     1201 IYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWD 1280
WD40-rpts      __)                                                                             

Query     1281 LRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDDLLEERMKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDT 1360
WD40-rpts                                                                                    (_

Query     1361 KDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQQTARTTLIWKMTSSYL 1419
WD40-rpts      ________________________WD 4________________________)      

4 WD40-repeats found in QUERY=ENSMUSP00000123865 (Len=1419):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7  1082-1120     6.23  372.17  0.00060       25.0%     54.22
  WD 2:  Seg 11  1124-1164     5.38  336.86  0.00180       22.5%     51.83
  WD 3:  Seg 15  1165-1203     5.35  335.46  0.00188       15.0%     44.27
  WD 4:  Seg 29  1359-1413     3.12  243.35  0.03224       12.5%     23.99

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1082-1120   -ISVFREANEDESG---------------FTCCAFSARERFLMLGT--CTGQLKLYN
   WD 2 1124-1164   -GQEEASYNCHNSA---------------ITHLEPSRDGSLLLTSATWSQPLSALWG
   WD 3 1165-1203   -MKSVFDMKHSFTE---------------DHYVEFSKHSQDRVIGT--KGDIAHIYD
   WD 4 1359-1413   DTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQQ--TARTTLIWK

   WD40 Template    TGECLRTLSGHTSG---------------VTSVSFSPDGKRLVSGS--EDGTIKVWD