Input parameters:

  Query = ENSMUSP00000123723 (Len=712)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000123723, Len=712):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQLQAQHLSHAT 80  
WD40-rpts                                                                                      

Query       81 HGPPVQLPPHPSGLQPPGIPPVTGSSSGLLALGALGSQAHLAVKDEKNHHELDHRERESSTNNSVSPSESLRASEKHRGS 160 
WD40-rpts                                                                                      

Query      161 ADYSMEAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTP 240 
WD40-rpts                     (_________________WD 1_________________)                         

Query      241 SSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRSMPGKPPGMDPIASALRTPITLTSSYPAPFAMMSHHEMN 320 
WD40-rpts                                                                                      

Query      321 GSLTSPSAYAGLHNIPSQMSAAAAAAAAAYGRSPMVSFGAVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQP 400 
WD40-rpts                                                          (_________________WD 2______

Query      401 VPFPHDALAGPGIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKL 480 
WD40-rpts      ___________)   (________________WD 3________________)(_____________________WD 4_

Query      481 LPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 560 
WD40-rpts      ___________________)     (_________________WD 5________________)   (____________

Query      561 ASCIDISHDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHE 640 
WD40-rpts      _____WD 6________________)(__________________WD 7_________________)  (__________

Query      641 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY 712 
WD40-rpts      _______WD 8________________)(__________________WD 9_________________)   

9 WD40-repeats found in QUERY=ENSMUSP00000123723 (Len=712):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   176-215      5.13  326.41  0.00248       12.5%     -14.21
  WD 2:  Seg  5   373-412      5.78  353.32  0.00108       10.0%     26.72
  WD 3:  Seg  7   416-453      6.40  379.01  0.00049       22.5%     52.73
  WD 4:  Seg 11   454-500      7.59  428.17  0.00011       25.0%     47.56
  WD 5:  Seg 14   506-544      8.66  472.43  2.7e-05       30.0%     56.15
  WD 6:  Seg 18   548-586      9.93  524.66  5.3e-06       35.0%     53.92
  WD 7:  Seg 22   587-627      7.07  406.75  0.00021       25.0%     52.27
  WD 8:  Seg 26   630-668      8.49  465.30  3.3e-05       30.0%     53.61
  WD 9:  Seg 30   669-709      7.62  429.54  0.00010       32.5%     53.24

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  176-215    DSL-------SRYDSD-GDKSDDLVVDVSNEDPATPRVSPAHSPPENG
   WD 2  373-412    GLP-------SSLASI-PGGKPAYSFHVSADGQMQPVPFPHDALAGPG
   WD 3  416-453    -HA-------RQINTL-SHGEVVCAVTISNPTRHVYTGG-KGCVKIWD
   WD 4  454-500    ISQPGSKSPISQLDCL-NRDNYIRSCKLLPDGRTLIVGGEASTLTIWD
   WD 5  506-544    -PR-------IKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWD
   WD 6  548-586    -QT-------LVRQFQ-GHTDGASCIDISHDGTKLWTGGLDNTVRSWD
   WD 7  587-627    LRE-------GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH
   WD 8  630-668    -KP-------DKYQLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR
   WD 9  669-709    TPY------GASIFQS-KESSSVLSCDISADDKYIVTGSGDKKATVYE

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD