WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000123588 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000123588 (Len=1799) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000123588, Len=1799): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAAAPTQIEAELYYLIARFLQSGPCNKSAQVLVQELEEHQLIPRRLDWEGKEHRRSFEDLVAANAHIPPDYLLKICERIG 80
WD40-rpts (
Query 81 PLLDKEIPQSVPGVQTLLGVGRQSLLRDAKDCKSTLWNGSAFAALHRGRPPELPVNYVKPPNVVNITSARQLTGCSRFSH 160
WD40-rpts _________________WD 1________________)
Query 161 VFPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIWATDDGRLLATLRGHSAEISDMAVNYENTLIAAG 240
WD40-rpts (_________________WD 2________________) (_________________WD 3_______
Query 241 SCDKVVRVWCLRTCAPVAVLQGHSASITSIQFCPSTKGTTRYLTSTGADGTICFWQWHVKTMKFRDRPVKFTERSRPGVQ 320
WD40-rpts _________)(____________________WD 4____________________) (_______________
Query 321 ISCSSFSSGGMFITTGSTDHVIRIYYLGSEIPEKIAELESHTDKVVAVQFCNNGDSLRFVSGSRDGTARIWQYQQQEWKS 400
WD40-rpts ___WD 5__________________)(____________________WD 6____________________)
Query 401 IVLDMATKMSGNNLTSAEDKVTKLKVTMVAWDRYDTTVITAVNNFLLKVWNSVTGQLLHTLSGHDDEVFVLEAHPFDQRI 480
WD40-rpts (_____________________WD 7_____________________) (_________________WD 8____
Query 481 ILSAGHDGNIFIWDLDRGTKIRNYFNMIEGQGHGAVFDCKFSPDGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHTD 560
WD40-rpts _____________) (_________________WD 9________________)
Query 561 YRPLIRDANNYVLDEQTQQAPHLMPPPFLVDVDGNPHPTKFQRLVPGRENCKDEQLIPQLGYVANGDGEVVEQVIGQQTN 640
WD40-rpts
Query 641 DQEESILDGIIRELQREQDLRLINEGDVPHFPINRSYSVNGALSSPNMDIPSSPNIGLRRSGQIEGVRQMHNNAPRSQMA 720
WD40-rpts
Query 721 TERDLMAWSRRVVVNELNSGVSRVQEECRNAKGDLEVSLYTVEKKKKPSYPIQRNDYQPSCGRSLRRTQRKRQHTYLTRS 800
WD40-rpts
Query 801 NIEHNSQASSQTSGVQEDSDSSSEEDETVGTSDASVEDPVVEWQSESSSSDSSSEYSDWIADAGINLQPPKRQTRQATQK 880
WD40-rpts
Query 881 IYSSSEDENLKLEDRQKKPKQTKKKKGGLVSMAGEPNEEWLAPQWILDTIPRRSPFVPQMGDELIYFRQGHEAYVRAVRK 960
WD40-rpts
Query 961 SKIYSVNLQKQPWNKMDLREQEFVKIVGIKYEIGPPTLCCLKLAFLDPISGKMTGESFSIKYHDMPDVIDFLVLHQFYNE 1040
WD40-rpts
Query 1041 AKERNWQIGDRFRSIIDDAWWFGTVESQQPFQPEYPDSSFQCYSVHWDNNEREKMSPWDMEPIPDGTAFPDEVGAGIPVS 1120
WD40-rpts
Query 1121 QEELTALLYKPQEGEWGAHSRDEECERVIQGINNLLSLDFASPFAVPVDLSAYPLYCTVVAYPTDLNTIKQRLENRFYRR 1200
WD40-rpts
Query 1201 ISALMWEVRYIEHNARTFNEPDSPIVKAAKIVTDVLLRFIGDQSCSDILDTYNKIKAEDPDSSDLEEDSEMVDLDSDGPG 1280
WD40-rpts
Query 1281 TSSGRRAKCRGRRQSLKCNPDAWKKQCEELLSLIYEREDSEPFRQPADPQSYPVQQQQEGESSQSVPPDRQDPSLSEDYQ 1360
WD40-rpts
Query 1361 DGIDTPMDFSTVKETLESGNYDSPLEFYKDVRQIFSNSKAYTSNKKSRIYSMTLRLSALFENHIKNIISDYKSAIQSQKR 1440
WD40-rpts
Query 1441 RRPRYRKRLRSSSSSLSSSRAPSPKGKQKQMKLQPKNDQNTSVAYARTSSPFSSPVSDAAEGVSLYLLDDEGDGPFSPSS 1520
WD40-rpts
Query 1521 FSGYSRSGNSHDPGKAKSFRNRVLPAKQDHSLDGPLTNVDGREPRTGAKRKLLSASEEDESMGGEEKEMKETKEQVHLSS 1600
WD40-rpts
Query 1601 SESGELGSSLSSESTSGSDSDSESTSRTDQDYVDGDHDYSKFIQTRPKRKLRKQHTNGKRNWKTRGTGGRGRWGRWGRWS 1680
WD40-rpts
Query 1681 RGGRGRGGRGRGGRGRGGGGGRGRGRGRGGRGASRGSSRAKRARVADDEFDTMFSGRFSRLPRIKTRNQGRRTVLYNDDS 1760
WD40-rpts
Query 1761 DNDNFVSTEDPLNLGTSRSGRVRKMTEKARVSHLMGWNY 1799
WD40-rpts
 9 WD40-repeats found in QUERY=ENSMUSP00000123588 (Len=1799): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 80-118 4.27 291.25 0.00738 12.5% 33.65 WD 2: Seg 8 170-208 8.70 473.93 2.5e-05 32.5% 48.56 WD 3: Seg 12 212-250 8.93 483.64 1.9e-05 27.5% 51.73 WD 4: Seg 16 251-296 7.81 437.08 8.0e-05 40.0% 50.76 WD 5: Seg 21 305-346 6.54 384.79 0.00041 22.5% 45.71 WD 6: Seg 25 347-392 8.20 453.54 4.8e-05 45.0% 52.43 WD 7: Seg 30 404-451 4.76 311.27 0.00397 20.0% 43.83 WD 8: Seg 33 455-494 8.13 450.40 5.3e-05 40.0% 55.82 WD 9: Seg 38 503-541 5.49 341.32 0.00156 22.5% 43.84Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 80-118 GP----LL--DK--EIPQSVPG--------VQTL-LGV-GRQ----SL--LRDAKDCKSTLWN WD 2 170-208 -I----KM--HK--RILGHLSS--------VYCVAFDR-SGR----RI--FTGSDDCLVKIWA WD 3 212-250 -G----RL--LA--TLRGHSAE--------ISDMAVNY-ENT----LI--AAGSCDKVVRVWC WD 4 251-296 LR----TCAPVA--VLQGHSAS--------ITSIQFCP-STKGTTRYL--TSTGADGTICFWQ WD 5 305-346 RD----RP--VKFTERSRPGVQ--------ISCSSFSS-GGM----FI--TTGSTDHVIRIYY WD 6 347-392 LGSEIPEK--IA--ELESHTDK--------VVAVQFCN-NGD----SLRFVSGSRDGTARIWQ WD 7 404-451 DM----AT--KM--SGNNLTSAEDKVTKLKVTMVAWDR-YDT----TV--ITAVNNFLLKVWN WD 8 455-494 -G----QL--LH--TLSGHDDE--------VFVLEAHPFDQR----II--LSAGHDGNIFIWD WD 9 503-541 NY----FN--MI--EGQGH-GA--------VFDCKFSP-DGN----HF--ACTDSHGHLLLFG WD40 Template TG----EC--LR--TLSGHTSG--------VTSVSFSP-DGK----RL--VSGSEDGTIKVWD |
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