Input parameters:

  Query = ENSMUSP00000123253 (Len=1116)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000123253, Len=1116):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKFNIRKVLDGLTAGSSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQKILAVGTQTG 80  
WD40-rpts        (_____________________WD 1_____________________)_______________WD 2___________

Query       81 ALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAVLHSLKFCRERVTFCHLPFQSKWLYV 160 
WD40-rpts      _____)  (_________________WD 3________________)     (_________________WD 4______

Query      161 GTERGNIHIVNVESFTLSGYVIMWNKAIELSSKAHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEA 240 
WD40-rpts      __________)             (__________________WD 5_________________)  (____________

Query      241 IHSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHGKQLKDGKKPEPCKPILKVELKTTRSGEPFIILSGGLSYD 320 
WD40-rpts      _____WD 6________________)                                                      

Query      321 TVGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPV 400 
WD40-rpts                          (_________________WD 7_________________)                    

Query      401 TCCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTS 480 
WD40-rpts                         (____________________WD 8____________________)   (___________

Query      481 KVFEKSRNKDDRQNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVLTEVIPMLEVRLLYEINDVDTPEG 560 
WD40-rpts      ______WD 9________________)                                                     

Query      561 EQPPPLSTPVGSSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLALNS 640 
WD40-rpts                                                                      (______________W

Query      641 SYGLVVFGNCNGIAMVDYLQKAVLLNLSTIELYGSNDPYRREPRSPRKSRQPSGAGLCDITEGTVVPEDRCKSPTSAKMS 720 
WD40-rpts      D10_____________)                                                               

Query      721 RKLSLPTDLKPDLDVKDNSFSRSRSSSVTSIDKESRETISALHFCETLTRKADSSPSPCLWVGTTVGTAFVITLNLPPGP 800 
WD40-rpts                                                                                      

Query      801 EQRLLQPVIVSPSGTILRLKGAILRMAFLDATGCLMSPAYEPWKEHNVAEEKDEKEKLKKRRPVSVSPSSSQEISENQYA 880 
WD40-rpts                                                                                      

Query      881 VICSEKQAKVMSLPTQSCAYKQNITETSFVLRGDIVALSNSVCLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIART 960 
WD40-rpts                                                                                      

Query      961 FCFANNGQALYLVSPTEIQRLTYSQETCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASR 1040
WD40-rpts                                                                                      

Query     1041 SLAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYKDKKWYQF 1116
WD40-rpts                                                                                  

10 WD40-repeats found in QUERY=ENSMUSP00000123253 (Len=1116):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-50       5.07  324.21  0.00266       20.0%      2.38
  WD 2:  Seg  2    48-86       6.26  373.17  0.00058       20.0%     44.16
  WD 3:  Seg  5    89-127      6.31  375.27  0.00054       22.5%     56.29
  WD 4:  Seg  9   133-171      5.83  355.40  0.00101       25.0%     54.72
  WD 5:  Seg 14   185-225      7.17  410.64  0.00018       30.0%     47.85
  WD 6:  Seg 17   228-266      6.69  391.11  0.00033       20.0%     54.38
  WD 7:  Seg 27   341-380      4.47  299.19  0.00577        7.5%     13.89
  WD 8:  Seg 33   420-465      5.61  346.43  0.00133       20.0%     37.87
  WD 9:  Seg 37   469-507      4.36  294.91  0.00659       12.5%     36.09
  WD10:  Seg 45   625-657      3.08  241.78  0.03381       17.5%     40.52

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-50     KFN------IRKVLDGLTAGSSSASQQQ-QQQQHPPGNREPEIQETLQSEHFQLC
   WD 2   48-86     -QL------CKTVRHGFPYQPSALAFDP-VQKILAVGTQTG----ALRL----FG
   WD 3   89-127    -GV------ECYCQHDSGAAVIQLQFLI-NEGALVSALADD----TLHL----WN
   WD 4  133-171    -PA------VLHSLKFCRERVTFCHLPF-QSKWLYVGTERG----NIHI----VN
   WD 5  185-225    NKA------IELSSKAHPGPVVHISDNPMDEGKLLIGFESG----TVVL----WD
   WD 6  228-266    -SK------KADYRYTYDEAIHSVAWHH-EGKQFICSHSDG----TLTI----WN
   WD 7  341-380    MDY------SIVDFLTLCETPYPNDFQE-PYAVVVLLEKDL----VLID----LA
   WD 8  420-465    VGARQKRQGYSKKEWPINGGNWGLGAQS-YPEIIITGHADG----SVKF----WD
   WD 9  469-507    -IT------LQVLYKLKTSKVFEKSRNK-DDRQNTDIVDED----PYAI----QI
   WD10  625-657    ------------VGGEPPQQITSLALNS-SYGLVVFGNCNG-----IAM----VD

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDG----TIKV----WD