Input parameters:

  Query = ENSMUSP00000122293 (Len=1311)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000122293, Len=1311):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEWSPDGEYFATAGKDDCLLKVWYPMTGWKSSIIPQDPHEVKRRRASTQFSFVYLAHPRAVTGFSWRKTSKYMPRGSVCN 80  
WD40-rpts                                                                                      

Query       81 VLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSVASNLSSAGKHKDRIQHALETIHHLKNLRKGQRRSSVLVTHAEL 160 
WD40-rpts                                                                                      

Query      161 MPDKTATHEVHRHISHHANALCHFHIAASINPTTDIPNVLVGTAFNIDDINGGFVVHWLNNKEFHFTSSTEIFMHQLRKL 240 
WD40-rpts                                                                                      

Query      241 SEKQLDHESDDADREDEERSQDERERGLRMKLDHELSLDRESEAGTGSSEHEDGEREGSPRTHPRPSISMPLPTVLLDRK 320 
WD40-rpts                                                                                      

Query      321 IETLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQVSFSSRIPVAFPSGDANSLSKNIMMYACVNATKDS 400 
WD40-rpts                                                                                      

Query      401 YNPSQQEMMSVDSPHGSQLHSPSHSTDMNILAPTVMMVSKHIDGSLNQWAVTFADKSAFTTVLTVSHKFRYCGHRFHLND 480 
WD40-rpts                                                                                      

Query      481 LACHSVLPLLLTSSHHNALLTPESDCQWDSDSKVNRLIDPVKHTKASSKQPLRNAATRTFHDPNAIYSELILWRVDPIGP 560 
WD40-rpts                                                                                      

Query      561 LSYTGGVSELARINSLHTSAFSNVAWLPTLIPSYCLGTYCNSASACFVASDGKNLRLYQAVVDARKLLDELSDPEASKLI 640 
WD40-rpts                                                                                      

Query      641 GEVFNIVSQQSTARPGCIIELDAITDQCGSNTQLLHVFQEDFIIGYKPHKEDMEKKEKESEIFFQPSQGYRPPPFSEKFF 720 
WD40-rpts                                                                                      

Query      721 LVVIEKDGNNNSILHMWHLHLKSVQACLAKAAEGISSDSLLSVPGQKNLDSSPETSSSMSSVPHSSSIANLQTASKLILS 800 
WD40-rpts                                                                                      

Query      801 SRLVYSQPLDLPEAVEVIRATPSAGHLSSSSIYPVCLAPYLVVTTCSDNKVRFWKCCMETNSLGNTSDESETYHWRRWPL 880 
WD40-rpts                         (_______________WD 1_______________)                         

Query      881 MNDEGEDNSSTVSIVGRPVAVSCSYTGRLAVAYKQPIHHNGFISKEFSMHVCIFECESTGGSEWVLEQTIHLDDLVKVGS 960 
WD40-rpts                                                                                      

Query      961 VLDSRVSVDSNLFVYSKSDAFLSKDRYLIPNIKHLVHLDWVSKEDGSHILTVGVGANIFMYGRLSGIVSDQTNSKDGVAV 1040
WD40-rpts                                                                                      

Query     1041 ITLPLGGSIKQGVKSRWVLLRSIDLVSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWKHSVKFGNVDADSPVEETI 1120
WD40-rpts                                                                                      

Query     1121 QDHSALKSSMLARKSIVEGAAIPDDVFCSPTVVQDGGLFEAAHALSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCI 1200
WD40-rpts                                                                                      

Query     1201 AGEVAIVRDPDAGEGTKRHLSRTISVSGSTAKDTVTIGKDGTRDYTEIDSIPPLPLHALLAADQDTSYRISEDSTKKPQS 1280
WD40-rpts                                                                                      

Query     1281 YEDHIESQSEDQYSELFQVQEITTDDIDLEP 1311
WD40-rpts                                     

1 WD40-repeats found in QUERY=ENSMUSP00000122293 (Len=1311):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 28   820-855      3.10  242.75  0.03283       15.0%     19.84

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  820-855    ATPSAGHLSSSSIYPVCLAPYLVVTTCSDNKVRFWK

   WD40 Template    LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD