Input parameters:

  Query = ENSMUSP00000122127 (Len=262)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000122127, Len=262):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFPEPKPRAPELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNS 80  
WD40-rpts                   (_________________WD 1_________________)   (_________________WD 2__

Query       81 HLCSGGGDKTVVLWDVATGQVVRKFRGHAGVSTSEKTLVNVCIVEIHISPVRCWDCRSRKPEPVQTLDEARDGISSVKVS 160 
WD40-rpts      ______________)   (________________WD 3_______________)     (________________WD 

Query      161 DHEILAGSVDGRVRRYDLRMGQVSSDYVGSPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCC 240 
WD40-rpts      4_______________)(_________________WD 5_________________)   (__________________W

Query      241 LSERDTHVVSCSEDGKVFFWDL 262 
WD40-rpts      D 6_________________) 

6 WD40-repeats found in QUERY=ENSMUSP00000122127 (Len=262):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-53       9.00  486.51  1.7e-05       27.5%     54.95
  WD 2:  Seg  5    57-95      10.25  538.10  3.5e-06       42.5%     56.35
  WD 3:  Seg  9    99-135      7.29  415.98  0.00015       20.0%     49.92
  WD 4:  Seg 13   141-177      7.34  417.86  0.00015       30.0%     50.22
  WD 5:  Seg 17   178-217      7.93  442.42  6.8e-05       25.0%     53.91
  WD 6:  Seg 21   221-261      8.40  461.47  3.8e-05       35.0%     53.82

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-53     PQKRMKTLDCSQGAVRAVR--FNVDGNYCLTCGSDKTLKLWN
   WD 2   57-95     -GTLLRTYSGHGYEVLDAA--GSFDNSHLCSGGGDKTVVLWD
   WD 3   99-135    -GQVVRKFRGHAGVSTSEK--TLVNV--CIVEIHISPVRCWD
   WD 4  141-177    -PEPVQTLDEARDGISSVK--VSDH--EILAGSVDGRVRRYD
   WD 5  178-217    LRMGQVSSDYVGSPITCTC--FSRDGQCTLISSLDSTLRLLD
   WD 6  221-261    -GELLGEYVGHKNQQYKLDCCLSERDTHVVSCSEDGKVFFWD

   WD40 Template    TGECLRTLSGHTSGVTSVS--FSPDGKRLVSGSEDGTIKVWD