Input parameters:

  Query = ENSMUSP00000121942 (Len=188)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000121942, Len=188):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLI 80  
WD40-rpts                      (____________WD 1___________)_________________WD 2______________

Query       81 IWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITS 160 
WD40-rpts      __)   (_________________WD 3________________)       (________________WD 4_______

Query      161 SGDTTCALWDIETGQQTVGFAGHSGDVM 188 
WD40-rpts      _________)                  

4 WD40-repeats found in QUERY=ENSMUSP00000121942 (Len=188):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-45       2.93  235.50  0.04095        5.0%     28.89
  WD 2:  Seg  3    45-83       9.61  511.65  7.9e-06       35.0%     48.80
  WD 3:  Seg  7    87-125      8.85  480.36  2.1e-05       15.0%     51.10
  WD 4:  Seg 11   133-170      7.63  429.64  0.00010       30.0%     44.94

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-45     ---------QIRDARKACGDSTLTQITAGL-DPVGRIQM
   WD 2   45-83     MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD
   WD 3   87-125    TNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYS
   WD 4  133-170    VRVSRELPGHTGYLSCCRFLDDNQ-IITSSGDTTCALWD

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD