WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: ENSMUSP00000121680    [Mus musculus]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = ENSMUSP00000121680 (Len=121)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000121680, Len=121):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEELILQDETLLETMQSYMDASLISLIEDFGESRLSLEDQNEMSLLTALTEILDNADSENLSPFDTIPDSELLVSPRESS 80  
WD40-rpts      (_____________________________________________WD 1______________________________

Query       81 SLHKLLNLSRTPPERDLITPIDPLGPSTGSSRVSGVEVPLA 121 
WD40-rpts      _______________)                         



1 WD40-repeats found in QUERY=ENSMUSP00000121680 (Len=121):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-96       3.02  239.48  0.03627       27.5%     -15.63
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-96     MEELILQDETLLETMQSYMDASLISLIEDFGESRLSLEDQNEMSLLTALTEILDNADSENLSPFDTIPDSELLVSPRESSSLHKLLNLSRTPPERD

   WD40 Template    TGECLRT---------------------------LS-------------------GHTSGVTSVSFSPDGKRLVSGSEDG----------TIKVWD


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Last modified: 09 Jan 2019