Input parameters:

  Query = ENSMUSP00000121654 (Len=281)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000121654, Len=281):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 80  
WD40-rpts            (_________________WD 1_________________)   (_________________WD 2_________

Query       81 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIVFVTSHEKRSPLRTPCDDD 160 
WD40-rpts      _______)   (_________________WD 3________________)                    (_________

Query      161 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 240 
WD40-rpts      ________WD 4________________)   (__________________WD 5__________________)   (__

Query      241 VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 281 
WD40-rpts      ________________WD 6_________________)   

6 WD40-repeats found in QUERY=ENSMUSP00000121654 (Len=281):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-46      10.82  561.48  1.7e-06       45.0%     57.28
  WD 2:  Seg  5    50-88      10.94  566.48  1.4e-06       42.5%     54.08
  WD 3:  Seg  9    92-130     10.98  568.20  1.4e-06       45.0%     57.48
  WD 4:  Seg 14   151-189      9.31  499.35  1.2e-05       30.0%     38.98
  WD 5:  Seg 17   193-234      9.10  490.38  1.5e-05       37.5%     58.02
  WD 6:  Seg 21   238-278      8.60  469.73  2.9e-05       35.0%     50.99

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-46     DGKFEKTISGHKLGISDVAWS---SDSNLLVSAS--DDKTLKIWD
   WD 2   50-88     -GKCLKTLKGHSNYVFCCNFN---PQSNLIVSGS--FDESVRIWD
   WD 3   92-130    -GKCLKTLPAHSDPVSAVHFN---RDGSLIVSSS--YDGLCRIWD
   WD 4  151-189    -SPLRTPCDDDNPPVSFVKFS---PNGKYILAAT--LDNTLKLWD
   WD 5  193-234    -GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS--EDNLVYIWN
   WD 6  238-278    -KEIVQKLQGHTDVVISTACH---PTENIIASAALENDKTIKLWK

   WD40 Template    TGECLRTLSGHTSGVTSVSFS---PDGKRLVSGS--EDGTIKVWD