Input parameters:

  Query = ENSMUSP00000121616 (Len=225)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000121616, Len=225):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 TRFLMRMRLTPDCSKMLISTSSGYLLILHELDLTKSLEVGSYPILRARRTTSSSGVSPRNSLEVLTPEVPGERDRGNCIT 80  
WD40-rpts                                                                                      

Query       81 SLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYG 160 
WD40-rpts                                                           (_____________WD 1_________

Query      161 IRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF 225 
WD40-rpts      ____)                  (_________________WD 2________________)   

2 WD40-repeats found in QUERY=ENSMUSP00000121616 (Len=225):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   134-165      3.45  257.29  0.02103       17.5%     32.52
  WD 2:  Seg 12   184-222      8.89  481.68  2.0e-05       25.0%     42.86

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  134-165    ------ANVGRGYIKELCFSPDGRMISS-PHGYGIRLLG
   WD 2  184-222    LRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQ

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD