Input parameters:

  Query = ENSMUSP00000121507 (Len=1099)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000121507, Len=1099):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKFNIRKVLDGLTAGSSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQKILAVGTQTG 80  
WD40-rpts                                                     (_________________WD 1___________

Query       81 ALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAVLHSLKFCRERVTFCHLPFQSKWLYV 160 
WD40-rpts      _____)  (_________________WD 2________________)     (_________________WD 3______

Query      161 GTERGNIHIVNVESFTLSGYVIMWNKAIELSSKAHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEA 240 
WD40-rpts      __________)             (__________________WD 4_________________)  (____________

Query      241 IHSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHGKQLKDGKKPEPCKPILKVELKTTRSGEPFIILSGGLSYD 320 
WD40-rpts      _____WD 5________________)                                                      

Query      321 TVGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPV 400 
WD40-rpts                          (_________________WD 6_________________)                    

Query      401 TCCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTS 480 
WD40-rpts                         (____________________WD 7____________________)   (___________

Query      481 KVFEKSRNKDDRQNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVLTEVIPMLEVRLLYEINDVDTPEG 560 
WD40-rpts      ______WD 8________________)                                                     

Query      561 EQPPPLSTPVGSSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLALNS 640 
WD40-rpts                                                                      (______________W

Query      641 SYGLVVFGNCNGIAMVDYLQKAVLLNLSTIELYGSNDPYRREPRSPRKSRQPSGAGLCDITEGTVVPEDRCKSPTSDVKD 720 
WD40-rpts      D 9_____________)                                                               

Query      721 NSFSRSRSSSVTSIDKESRETISALHFCETLTRKADSSPSPCLWVGTTVGTAFVITLNLPPGPEQRLLQPVIVSPSGTIL 800 
WD40-rpts                                                                                      

Query      801 RLKGAILRMAFLDATGCLMSPAYEPWKEHNVAEEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVMSLPTQS 880 
WD40-rpts                                                                                      

Query      881 CAYKQNITETSFVLRGDIVALSNSVCLACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCFANNGQALYLVSPTE 960 
WD40-rpts                                                                                      

Query      961 IQRLTYSQETCENLQEMLGELFTPVETPEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRSLAQHIPGPGGIEGVKG 1040
WD40-rpts                                                                                      

Query     1041 AASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKYKDKKWYQF 1099
WD40-rpts                                                                 

9 WD40-repeats found in QUERY=ENSMUSP00000121507 (Len=1099):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    48-86       6.29  374.42  0.00056       20.0%     43.89
  WD 2:  Seg  5    89-127      6.36  377.54  0.00051       22.5%     56.68
  WD 3:  Seg  9   133-171      5.85  356.26  0.00098       25.0%     54.31
  WD 4:  Seg 14   185-225      7.19  411.56  0.00018       30.0%     47.03
  WD 5:  Seg 17   228-266      6.66  389.93  0.00035       20.0%     54.05
  WD 6:  Seg 26   341-380      4.58  304.00  0.00497        7.5%     14.86
  WD 7:  Seg 32   420-465      5.70  349.99  0.00119       20.0%     38.61
  WD 8:  Seg 36   469-507      4.43  297.50  0.00608       12.5%     40.57
  WD 9:  Seg 43   625-657      3.06  241.05  0.03457       20.0%     44.22

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   48-86     -QL------CKTVRHGFPYQPSALAFDP-VQKILAVGTQTGALRLFG
   WD 2   89-127    -GV------ECYCQHDSGAAVIQLQFLI-NEGALVSALADDTLHLWN
   WD 3  133-171    -PA------VLHSLKFCRERVTFCHLPF-QSKWLYVGTERGNIHIVN
   WD 4  185-225    NKA------IELSSKAHPGPVVHISDNPMDEGKLLIGFESGTVVLWD
   WD 5  228-266    -SK------KADYRYTYDEAIHSVAWHH-EGKQFICSHSDGTLTIWN
   WD 6  341-380    MDY------SIVDFLTLCETPYPNDFQE-PYAVVVLLEKDLVLIDLA
   WD 7  420-465    VGARQKRQGYSKKEWPINGGNWGLGAQS-YPEIIITGHADGSVKFWD
   WD 8  469-507    -IT------LQVLYKLKTSKVFEKSRNK-DDRQNTDIVDEDPYAIQI
   WD 9  625-657    VG------------GEPPQQITSLALNS-SYGLVVFGNCNG-IAMVD

   WD40 Template    TGE------CLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD