WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000121373 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000121373 (Len=2743) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000121373, Len=2743): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAASERLYELWLLYYAQKDLGYLQQWLKAFVGVFEKTISLSSLEPRRPEEAGAEVPLLPLDALHALAEQLDQDDLDQALL 80
WD40-rpts
Query 81 LLKLFIILCRNLENVEAGWGQVLVPRVLALLTVLMAELKGSSQESHGTQLENVALHALLLCEGLFDPYQTWRRQLTGEVI 160
WD40-rpts
Query 161 SSKEKSKYKFPPAALPCEFGAFFQENLQDAERLPPTLLLRLIHLFGAILAGGKANGQMAVSAGSVQGLLGVVRGWGRGPA 240
WD40-rpts
Query 241 QDPQQVPLALRALVGAVHVLHASRAPPRGPELRTLLEGYFHILNADWPTSPSSSPEEALVTLRVSMLDAIPMMLACEDRP 320
WD40-rpts
Query 321 VLQATFLSNNCFEHLIRLIQNSKLYLQARAPPEGDSDLATWLLTEPDVQKVLDQDTDAIAVHVVRVLTCIMSGSPSAKEV 400
WD40-rpts
Query 401 FKERIGYQHLQEVLQSHGPPTHRLLQELLNMAVEGDHSMHPPPPIRNEQPVLVLMQWLPALPTAELRLFLAQRLWWLCDS 480
WD40-rpts
Query 481 CPASRTTCVQAGLVGYLLETLNTGTALGARCQEQLLALLQALGRVSLRPLELRRLLRPPPGLDSESSGNESQKARHAGAV 560
WD40-rpts
Query 561 IRALSGMARHRGPARALRYFDLTPSMAGIMVPPVQRWPGAGFTFHAWLCLQSSEAVPTSAPSRPLQRKQLYSFFTSSGSG 640
WD40-rpts
Query 641 FEAFFTAAGTLVVAVCTRKEYVTVNLPEVSFADSAWHCVAIVHVPGRRPFSQNLVNVFKDGHLVKTVPFRFPSLSEPFSS 720
WD40-rpts
Query 721 CCIGSAGHRTTTTTTGLPASSVSTALAHTHPSLTRSQSVPASTGLGWGPGLGTPLQEGSVSSTLAGTQDTRWGSPTSLEG 800
WD40-rpts
Query 801 ELGAVAIFHEALQPSALRVLCSLGPNEPAPFKPEGELHEFGTKLLLHYSPQACKNNICLDLSPGHGLDGRLTGHRVETWD 880
WD40-rpts
Query 881 VKDVVNCVGGMGVLLPLLERVAVQPQEAEAGPCETHDLVGPELTSGRNTQGLLLPLGKSSEDRMERNAVAAFLLMLRNFL 960
WD40-rpts
Query 961 QNHTVNQESLVQCQGPAIIGALLRKVPSSAMDMNVLMSAQLLMEQAAADGGGPLLYLLYQHLLFNFHLWTLSDFAVRLGH 1040
WD40-rpts
Query 1041 IQYMSSMVREHRQKLRKKYGVQFLLDALRTHYSPQRERPLAADDLRTVQTSLLGLVREFLVRNFSVEDMQVVLNFLAATG 1120
WD40-rpts
Query 1121 DDGQVVGTLELLLTLLQGSPVQDPLAAFLLELGNLEVLLALLVRPKSTPLLTDRVCKILRRLQQNERLPERNRQRIRLHD 1200
WD40-rpts
Query 1201 CGLQGLVASLSEESISPQLCQGLYKLFVGTDCLNLSDLLAVVQLSLQADLSVRLDICRQLFYLIYGQPDVVRLLARQAGW 1280
WD40-rpts
Query 1281 QDVLTRLYVLEAATDSSPPRFLPELPISSELALSPPPTELPADSSDVFLPSESPCPDQDAFYQALSPFSTPFDLGLERAS 1360
WD40-rpts
Query 1361 IGSGNTAGGGSSNGTVTPASQPGTPSPLDGPRPFPTAQGRHSSSLSNVLEDGSLLEPNISGDDTSNTSNPQQTPEEELCN 1440
WD40-rpts
Query 1441 LLTNVLFSVTWRGVEGSAEAAWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAPPGGLANLSQQAL 1520
WD40-rpts
Query 1521 WLLRLLQDFLCAEGHGNQELWSEKLFEGVCNLLDRLGAWPHLANSTADLREMAQIGLRLVLGYILLEDPQLHAQAYVKLH 1600
WD40-rpts
Query 1601 TLLQTAVPTRREEACYVLSKLEAALSRALTTSSSETEHASTAVAASERCSWLVPLVRTLLDRAYGPLGLQWGLPSLPPTN 1680
WD40-rpts
Query 1681 GSPTFFEDFQAFCATAEWRHFIDKQVQPTMSKFEMDTYAKSHDLMSGFWNACYDTLMSSGQRHQRDRIQSRRAFKELVLE 1760
WD40-rpts
Query 1761 PAQRRARVEGLRYASVLKQQAAQHSTALLHWGALWRQLSSPCGAWALRIPPAPHWKLSSAETYSRMRLKLVPNHHFDPHL 1840
WD40-rpts
Query 1841 EASALRDNLGEAPMTPTEETSLPLAVTKEAKISAPPEELPEEQLGEEDLAALESLMEEAAELDEKREKLVLSAECQLVTV 1920
WD40-rpts
Query 1921 VAVVPGLLEITTQHVYFYDGSTERVETEEGIGHDFRRPLAQLREVHLRRFNLRRSALELFFIDQSNYFLNFPHKVAASSA 2000
WD40-rpts
Query 2001 SSPCQAPRPQLYPIPSHTQLRNQVYSLLLRLRPPTQGYLSSRSPLEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYN 2080
WD40-rpts
Query 2081 DLSQYPVFPWVLQDYVSPVLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLI 2160
WD40-rpts
Query 2161 RVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPP 2240
WD40-rpts
Query 2241 WAGSPEDFIQKHRQALESEYVSTHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGIISNFG 2320
WD40-rpts
Query 2321 QTPCQLLKEPHPPRLSAEEAANRLARLDTNSPSIFQNLNQLKAFFAEVVSEAVPLVLALVPHRQSHSFITQSSSDMLVTV 2400
WD40-rpts
Query 2401 SASGLLGTHTWLPYDRNINNYFTFSKDPTMGSPKVQKLLSGPWVSDSGVSAQALAVAPDGKLLFSGGHWDGSLRVTSLPR 2480
WD40-rpts (___________________WD 1__________________)
Query 2481 GRLLNQLSRHLDIVTCLALDTCGIYLISGSRDTTCMVWRLLQQSGLSAGLAPKPVQVLYGHVAAVSCVAISTELDMAVSG 2560
WD40-rpts (_________________WD 2________________) (_________________WD 3_______
Query 2561 SEDGTVIIHTVRRGQFVAALRPPGATLPGPISHLALGAEGQIVVQSSACERPGAQVTYSLHLYSVNGRLRASVTLTEQPT 2640
WD40-rpts _________)
Query 2641 ALTVAEDFVLLGTAQCSLHILHLNKLRPAVPPLPMKVPVHSVSVTKERSHVLVGLEDGKLIVVGAGQPSEVRSSQFARRL 2720
WD40-rpts (__________________WD 4__________________)
Query 2721 WRSSRRISQVSSGETEYNPGEAR 2743
WD40-rpts
 4 WD40-repeats found in QUERY=ENSMUSP00000121373 (Len=2743): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 23 2435-2477 3.24 248.51 0.02753 30.0% 44.53 WD 2: Seg 26 2481-2519 6.86 398.15 0.00027 40.0% 56.30 WD 3: Seg 30 2532-2570 5.07 324.22 0.00266 35.0% 53.45 WD 4: Seg 42 2663-2704 3.72 268.28 0.01500 22.5% 45.32Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2435-2477 VQKL--LSGPWVSDSGVSAQALAVAPDGKLLFSGGHWDGSLRVTS WD 2 2481-2519 -GRL--LN--QLSRHLDIVTCLALDTCGIYLISGSR-DTTCMVWR WD 3 2532-2570 -PKP--VQ--VLYGHVAAVSCVAISTELDMAVSGSE-DGTVIIHT WD 4 2663-2704 LNKLRPAV--PPLPMKVPVHSVSVTKERSHVLVGLE-DGKLIVVG WD40 Template TGEC--LR--TLSGHTSGVTSVSFSPDGKRLVSGSE-DGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |