Input parameters:

  Query = ENSMUSP00000121173 (Len=736)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000121173, Len=736):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPTPLQSGQPFKFSVLEICDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQAEI 80  
WD40-rpts                                                                                      

Query       81 VKRLSAICAQMVPFLTQEHQQQVLQAVDRAKQVTVGELNSLLGQQNQLQPLSHAPPVPLTPRPAGLVGAGATGLLALSGA 160 
WD40-rpts                                                                                      

Query      161 LAAQAQLVAAVKEDRVGVDAEGSRVDRAASRSSSPSPPESLVEEDHPSSRGGSGKQQRAEDKDLSGPYDSEEDKSDYNLV 240 
WD40-rpts                                                                                      

Query      241 VDEDQPSEPPSPVTTPCGKAPLCIPARRDLTDSPASLASSLGSPLPRSKDIALNDLPTGTPASRSCGTSPPQDSSTPGPS 320 
WD40-rpts                                                                                      

Query      321 SASHLCQLAAQPAAPTDSIALRSPLTLSSPFTSSFSLGSHSTLNGDLSMPGSYVGLHLSPQMAFESHPHLRGSSVSLPGI 400 
WD40-rpts                                                                                      

Query      401 PVAKPAYSFHVSADGQMQPVPFPSDALVGTGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVGQPGSKT 480 
WD40-rpts                                         (________________WD 1_______________)(_______

Query      481 PVAQLDCLNRDNYIRSCKLLPDGQSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAVSPDAKVCFSCCSDGNIV 560 
WD40-rpts      ______________WD 2____________________)     (_________________WD 3______________

Query      561 VWDLQNQAMVRQFQGHTDGASCIDISDYGTRLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPNQDWLAVGMESS 640 
WD40-rpts      __)   (_________________WD 4________________)(__________________WD 5____________

Query      641 HVEVLHVRKPEKYQLRLHESCVLSLKFASCGRWFVSTGKDNLLNAWRTPYGASIFQVTCPGWLATRDTGPSAHTWLAPSW 720 
WD40-rpts      _____)(__________________WD 6_________________)   (________________WD 7_________

Query      721 LGGAGALGKYNTFINL 736 
WD40-rpts      _______)        

7 WD40-repeats found in QUERY=ENSMUSP00000121173 (Len=736):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   436-472      6.27  373.70  0.00057       32.5%     49.40
  WD 2:  Seg 10   473-519      8.27  456.22  4.4e-05       27.5%     53.21
  WD 3:  Seg 14   525-563      8.57  468.58  3.0e-05       30.0%     54.90
  WD 4:  Seg 18   567-605      9.92  524.49  5.3e-06       35.0%     52.09
  WD 5:  Seg 22   606-646      6.66  389.89  0.00035       20.0%     53.68
  WD 6:  Seg 26   647-687      8.38  460.70  3.8e-05       27.5%     51.64
  WD 7:  Seg 30   691-728      5.61  346.59  0.00133       10.0%     43.23

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  436-472    -AR-------QLHTL--AHGEVVCAVTISSSTQHVYTGG-KGCVKVWD
   WD 2  473-519    VGQPGSKTPVAQLDCL-NRDNYIRSCKLLPDGQSLIVGGEASTLSIWD
   WD 3  525-563    -PR-------IKAELT-SSAPACYALAVSPDAKVCFSCCSDGNIVVWD
   WD 4  567-605    -QA-------MVRQFQ-GHTDGASCIDISDYGTRLWTGGLDNTVRCWD
   WD 5  606-646    LRE-------GRQLQQHDFSSQIFSLGHCPNQDWLAVGMESSHVEVLH
   WD 6  647-687    VRK------PEKYQLR-LHESCVLSLKFASCGRWFVSTGKDNLLNAWR
   WD 7  691-728    -GA-------SIFQVT-CP-GWLATRDTGPSAHTWLAPSWLGGAGALG

   WD40 Template    TGE-------CLRTLS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD