Input parameters:

  Query = ENSMUSP00000121127 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000121127, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLI 80  
WD40-rpts                                                  (_________________WD 1______________

Query       81 IWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDGQIITS 160 
WD40-rpts      __)   (_________________WD 2________________)       (________________WD 3_______

Query      161 SGDTTCALWDIETGQQTTTFTGHSGDVMSLSLSPDLKTFVSGACDASSKLWDIRDGMCRQSFTGHISDINAVSFFPSGYA 240 
WD40-rpts      _________)   (_________________WD 4________________)   (_________________WD 5___

Query      241 FATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCSVWDALKGGRSGVLAGHDNRVSCLGV 320 
WD40-rpts      _____________)(___________________WD 6___________________)   (_________________W

Query      321 TDDGMAVATGSWDSFLRIWN 340 
WD40-rpts      D 7________________)

7 WD40-repeats found in QUERY=ENSMUSP00000121127 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    45-83       9.44  504.74  9.8e-06       35.0%     47.65
  WD 2:  Seg  7    87-125      8.80  478.03  2.2e-05       15.0%     56.20
  WD 3:  Seg 11   133-170      7.21  412.42  0.00017       35.0%     51.09
  WD 4:  Seg 15   174-212     10.42  544.99  2.8e-06       45.0%     55.46
  WD 5:  Seg 19   216-254     10.43  545.67  2.7e-06       37.5%     53.65
  WD 6:  Seg 23   255-298      8.57  468.84  3.0e-05       35.0%     55.18
  WD 7:  Seg 27   302-340      9.73  516.45  6.8e-06       27.5%     49.80

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   45-83     -MR----TRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLIIWD
   WD 2   87-125    -TN----KMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN
   WD 3  133-170    -VR----VSRELPGHTGYLSCCRFLDDGQIITS-SGDTTCALWD
   WD 4  174-212    -GQ----QTTTFTGHSGDVMSLSLSPDLKTFVSGACDASSKLWD
   WD 5  216-254    -GM----CRQSFTGHISDINAVSFFPSGYAFATGSDDATCRLFD
   WD 6  255-298    LRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCSVWD
   WD 7  302-340    -GG----RSGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD