Input parameters:

  Query = ENSMUSP00000120901 (Len=251)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000120901, Len=251):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVNGPPHFTESTVLPRESGRNCKVYTFSKDGTLFAWSNGEKVNIINVANKGLLHSFDLPKAVCLEFSPNNTVLATWQPYT 80  
WD40-rpts             (_________________WD 1________________)(______________________WD 2_______

Query       81 TSKDGTAGTPNLQLYDMKTGACLKSFIQKKMQNWCPSWSDDEIICARNVNNEVHFFENNNFNTIANKLHLQKVNDFNLSP 160 
WD40-rpts      _______________)   (_________________WD 3________________)(_____________________

Query      161 GTQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPQAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLH 240 
WD40-rpts      WD 4____________________)                                                       

Query      241 YIATNGESAVV 251 
WD40-rpts                 

4 WD40-repeats found in QUERY=ENSMUSP00000120901 (Len=251):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-46       3.66  265.84  0.01617       12.5%     47.48
  WD 2:  Seg  4    47-96       4.30  292.27  0.00715       15.0%     44.80
  WD 3:  Seg  8   100-138      4.26  290.81  0.00748       15.0%     48.00
  WD 4:  Seg 12   139-185      3.86  274.09  0.01253       12.5%     26.83

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-46     FTESTVLPRESGRNCKVYTFSKDGTLFA-------W----------SNGE-KVNIIN
   WD 2   47-96     VANKGLLHSFDLPKAVCLEFSPNNTVLA-------TWQPYTTSKDGTAGTPNLQLYD
   WD 3  100-138    -GACLKSFIQKKMQNWCPSWSDDEIICA-------R----------NVNNEVHFFEN
   WD 4  139-185    NNFNTIANKLHLQKVNDFNLSPGTQPYKVAVYVPGS----------KGAPSFVRLYQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV-------S----------GSEDGTIKVWD