Input parameters:

  Query = ENSMUSP00000120830 (Len=780)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000120830, Len=780):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEQAGPGVFFSNNHPGAGGAKGLGPLAEAAAAGDGAAAAGAARAQYSLPGILHFLQHEWARFEVERAQWEVERAELQAQ 80  
WD40-rpts                                                                                      

Query       81 IAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDMKPPSYDSDEGNETEVQPQQNSQLMWKQGRQ 160 
WD40-rpts                                                                                      

Query      161 LLRQYLQEVGYTDTILDVKSKRVRALLGFSSDVTDREDDKNQDSVINGTEAEVKETAMIGKSELTDSASVLDNFKFLESA 240 
WD40-rpts                                                                                      

Query      241 AADVSDEDEDEDTDGRAKSVIDTSTIVRKKALPDTSEDRDTKEALKEFDFLVTSEEGDNESRSAGDGTDWEKEDQCLTPE 320 
WD40-rpts                                                                                      

Query      321 AWNVDQGVISKLKEQYKKERKGKKGVKRPNRSKLQDMLANLRDVDELPSLQPSVGSPSRPSSSRLPEQELSRADEVEALT 400 
WD40-rpts                                                                                      

Query      401 FPPSSGKSFIMGADEALESELGLGELAGLTVANEADSLAYDIANNKDALRKTWNPKFTLRSHFDGIRALAFHPIEPVLIT 480 
WD40-rpts       (________________________WD 1_______________________)(________________WD 2_____

Query      481 ASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVMSSNGEQCYSGGTDGRIQSWSTTNPNVDPYDAYDPSV 560 
WD40-rpts      __________)                  (_______________WD 3______________)              (_

Query      561 LRGPLLGHTDAVWGLAYSAAHQRLLSCSADGTLRLWNTTEVAPALSVFNDNQELGIPASVDLVSSDPSHMVASFSKGYTS 640 
WD40-rpts      ________________WD 4________________)(____________________WD 5__________________

Query      641 IFNMETQQRVLTLESNVDSTSSSSCQINRVISHPTLPISITAHEDRHIKFYDNNTGKLIHSMVAHLEAVTSLAVDPNGLY 720 
WD40-rpts      __)          (_________________WD 6________________)   (_________________WD 7___

Query      721 LMSGSHDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIASAGADALAKVFV 780 
WD40-rpts      _____________)   (___________________WD 8__________________)

8 WD40-repeats found in QUERY=ENSMUSP00000120830 (Len=780):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   402-454      6.58  386.49  0.00038       12.5%     29.59
  WD 2:  Seg  6   455-491      9.15  492.64  1.4e-05       32.5%     45.98
  WD 3:  Seg  9   510-544      8.43  462.84  3.6e-05       30.0%     49.07
  WD 4:  Seg 12   559-597      8.85  480.38  2.1e-05       35.0%     47.41
  WD 5:  Seg 15   598-643      5.15  327.54  0.00240       20.0%     47.20
  WD 6:  Seg 20   654-692      6.74  393.04  0.00031       20.0%     40.24
  WD 7:  Seg 23   696-734     10.04  529.41  4.6e-06       35.0%     56.14
  WD 8:  Seg 27   738-780      6.96  402.03  0.00024       22.5%     49.98

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  402-454    PPSSGKSFIMG----ADEALESELGLGELAGLTVANEADSLAYDIANNKDALRKTWN
   WD 2  455-491    ---PKFTLRSH----FD-------------GIRALAFHPIEPVLITASEDHTLKMWN
   WD 3  510-544    -----YTFRAH----KG-------------PVLCVVMSSNGEQCYSGGTDGRIQSWS
   WD 4  559-597    -SVLRGPLLGH----TD-------------AVWGLAYSAAHQRLLSCSADGTLRLWN
   WD 5  598-643    TTEVAPALSVF----ND-------NQELGIPASVDLVSSDPSHMVASFSKGYTSIFN
   WD 6  654-692    ESN-VDSTSSS----SC-------------QINRVISHPTLPISITAHEDRHIKFYD
   WD 7  696-734    -GKLIHSMVAH----LE-------------AVTSLAVDPNGLYLMSGSHDCSIRLWN
   WD 8  738-780    -KTCIQEFTAHRKKFEE-------------SIHDVAFHPSKCYIASAGADALAKVFV

   WD40 Template    TGECLRTLSGH----TS-------------GVTSVSFSPDGKRLVSGSEDGTIKVWD