Input parameters:

  Query = ENSMUSP00000120607 (Len=211)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000120607, Len=211):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPCSAPKASGMQSHCVPCPQGSQGVLLLQEEEPAGDRGAGSNHQGLESLPAWVWDLETHGCCCTISSKASGIKGELTACL 80  
WD40-rpts                  (___________________WD 1__________________)          (______________

Query       81 YLPGPRALCVATGTLAFLHLKVGSVPESHLVRSHQEPVVCCRYNPAFRHVVSCCEASVVKVWDFETGRQVSEFIGTHGNA 160 
WD40-rpts      _WD 2_______________)   (_________________WD 3________________)   (_____________

Query      161 GITCLTFDSSGRRLVTGGRDGCLKIWSYNNGHCLHTLQHGKWGGDSSKWSP 211 
WD40-rpts      _____WD 4_________________)                        

4 WD40-repeats found in QUERY=ENSMUSP00000120607 (Len=211):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-55       7.41  420.69  0.00013       22.5%     50.43
  WD 2:  Seg  7    66-101      7.10  407.74  0.00020       12.5%     44.09
  WD 3:  Seg 10   105-143      9.37  501.90  1.1e-05       25.0%     51.28
  WD 4:  Seg 14   147-187      9.08  489.65  1.6e-05       35.0%     56.45

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-55     -SHCVPCPQGS--QGVLLLQEEEPAGDRGAGSNHQGLESLPAWVWD
   WD 2   66-101    SSK----ASGI--KGELTACLYLPGPRALCVATGTLA----FLHLK
   WD 3  105-143    -VPESHLVRSH--QEPVVCCRYNPAFRHVVSCCEASV----VKVWD
   WD 4  147-187    -GRQVSEFIGTHGNAGITCLTFDSSGRRLVTGGRDGC----LKIWS

   WD40 Template    TGECLRTLSGH--TSGVTSVSFSPDGKRLVSGSEDGT----IKVWD