Input parameters:

  Query = ENSMUSP00000120605 (Len=756)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000120605, Len=756):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XGGDDGGAPADKNSVKSGDSSQDLKQSEGSEEEEEEEGCVVLEEDQEDEVTGTSELTLSDTMLSMETVVAPGDGRDREEE 80  
WD40-rpts                                                                                      

Query       81 EEPLTEQTEGKEQKILLDTACKMVRWLSAKLGPTVASRHVARNLLRLLTSCYVGPTRQQFTVSSDDTPPLNAGNIYQKRP 160 
WD40-rpts                                                                                      

Query      161 VLGDIVSGPVLSCLLHIAYLYGEPVLTYQYLPYISYLVAPGSNSNPSRLNSRKEAGLLAAVTLTQKIIVYLSDTTLMDIL 240 
WD40-rpts                                                                                      

Query      241 PRISHEVLLPVLGFLTSFVTGFPSGAQARTVLCVKTISLIALICLRIGQEMVQQHLSEPVATFFQVFSHLHELRQQDLPL 320 
WD40-rpts                                                                                      

Query      321 DPKGCTEGQLPEATFSDGQRRPVDPTLLEELQKVFTLEMAYTIYVPFSCLLGDIIRKIIPNHELVGELAGLYLESMSPSS 400 
WD40-rpts                                                               (__________________WD 1

Query      401 RNPASMEPTMASAGPEWDPQSGSCLQDDGHSGTFGSVLVGNRIQIPDSQPQSPGPLGSLSGVGSSGGLSNRNEDNALKRE 480 
WD40-rpts      _________________)  (___________________WD 2___________________)______________WD

Query      481 LPRSAHGLSGNWLAYWQYEIGVSQQDAHFHFHQIRLQSFPGHTGAVKCVAALSSEDFFLSGSKDRTVRLWPLYNYGDGTN 560 
WD40-rpts       3______________)               (_________________WD 4________________)         

Query      561 ETASRLIYAQHRKSVFYVGQLEAPQYVVSCDGAVHVWDPFTGKTLRTVDPSDSRVPLTAVAVMPAPHTSITMASSDSTLR 640 
WD40-rpts       (________________WD 5_______________)   (__________________WD 6________________

Query      641 FVDCRKPGLQAVEGSVLISSSSDHSLTVWKELEQKPTHHYKSASDPIHTFDLYGSEVVTGTVANKIGVCSLLEPPSQATT 720 
WD40-rpts      __)     (________WD 7________)   (________________WD 8_______________)(_________

Query      721 KLSSENFRGTLTSLALLPTKRHLLLGSDNGIIRLLA 756 
WD40-rpts      ___________WD 9____________________)

9 WD40-repeats found in QUERY=ENSMUSP00000120605 (Len=756):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   378-418      6.47  382.05  0.00044       22.5%     13.52
  WD 2:  Seg 12   421-464      4.02  280.88  0.01017       20.0%     29.99
  WD 3:  Seg 15   464-497      3.86  274.11  0.01253       12.5%     24.07
  WD 4:  Seg 18   513-551      8.53  466.95  3.2e-05       30.0%     49.12
  WD 5:  Seg 22   562-598      6.21  371.07  0.00062       25.0%     40.06
  WD 6:  Seg 25   602-643      6.68  390.70  0.00034       32.5%     52.88
  WD 7:  Seg 29   649-670      3.15  244.64  0.03099       17.5%     32.64
  WD 8:  Seg 31   674-710      6.10  366.45  0.00072       15.0%     47.16
  WD 9:  Seg 35   711-756      7.35  418.16  0.00014       22.5%     42.64

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  378-418    -II------PNHELVGELAGL--YLESMS-----PSS-RNPASMEPTMASAGPEWD
   WD 2  421-464    -SG------SCLQDDGHSGTF--GSVLVGNRIQIPDS-QPQSP--GPLGSLSGVGS
   WD 3  464-497    SSG------GLSNRNEDNALK--REL--------PRS-AHGLS--GN---WLAYWQ
   WD 4  513-551    -QI------RLQSFPGHTGAV--KCVAAL-----SSE-DFFLS--GSKDRTVRLWP
   WD 5  562-598    -TA------SRLIYAQHRKSV--FYVGQL-----EAP-QYVVS--C--DGAVHVWD
   WD 6  602-643    -GK------TLRTVDPSDSRVPLTAVAVM-----PAPHTSITM--ASSDSTLRFVD
   WD 7  649-670    --------------------------LQA-----VEG-SVLIS--SSSDHSLTVWK
   WD 8  674-710    -QK------PTHHYKSASDPI--HT--FD-----LYG-SEVVT--GTVANKIGVCS
   WD 9  711-756    LLEPPSQATTKLSSENFRGTL--TSLALL-----PTK-RHLLL--GSDNGIIRLLA

   WD40 Template    TGE------CLRTLSGHTSGV--TSVSFS-----PDG-KRLVS--GSEDGTIKVWD