WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000120285 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000120285 (Len=3095) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000120285, Len=3095): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATSRLIPKWIDFLKLLNDTIQQSKKPRAEEQSDVIVLTDRSQILFKESRYPLTMPTICHYFIEAHFFATLSLVSSYMKE 80
WD40-rpts
Query 81 ALAVVWVKNKTDDIVEKRTFPMSERLQPVQAMVHTGALHLIVAYCGDMILRLFGDHFKAFKPTGTVPCRFDISCLCFNPE 160
WD40-rpts
Query 161 TKMLLSGILGGVVTWNIEQTGKGLRMLQISPISGDEVVQNIALNGPNGCILALCESTLRVLEHQGQGQLEESKRFVATNC 240
WD40-rpts
Query 241 CSPITCCFTSLEENLLYAGNKVGEVYVWTFPQSQSLHSFRAHPTVVVCIQSRAEPHTLLTAGKEGIIKEWNLTSGDLLRH 320
WD40-rpts (__________________WD 1__________________)
Query 321 LKLGEELYALQFIDNTTFFCQTTHQFSLRRLPGFYSLFNICGSIPQQLRRIRCGNNWYRILCATEDGLLRFVSPVTGDLL 400
WD40-rpts (________
Query 401 LITWPFSVLDHAVDWAYDPNKEELFVATGTSEVLVFDASRNPCPVKYLLCTSPDIQDYVQCLAYGNFHLGRGLEGLMFSG 480
WD40-rpts ____________WD 2____________________)
Query 481 HQSGMIRVLSQHSCARIEKNVHFGAVLALSIFYGGLMTSRENSLLCSYGVDDYIQLSEAVLTGARLQLKTLACILSSCPL 560
WD40-rpts
Query 561 KHLVLLPKAVGAITSTNCLRLWKLREFISFGSSQGIKFIETLPLHQCPITSFDVCLSLNVFATGGSDGTVRLWDFQGRLI 640
WD40-rpts (_______________________WD 3______________________)
Query 641 AMLDSSLHFGPLCFANDRGDLLVTFNQSIYLVSCLQLLPPSILAHLALLKTIDDMVETPKPFMPSFFFSFETLFVPKYSY 720
WD40-rpts
Query 721 QGLQKQDLEGLVSLSNKRAIAFDHNVPHVIEEDEDGSTVLLTGPRHTPLEEGELLHEFDKQPQTHYVIPPQLQLTAWDGL 800
WD40-rpts
Query 801 NPYQILGCYFGCGRKWLIAPDCYIPNSVIRARLWPEGSPIFLKCSLHPPQRDLEWEKGQSFFWQSRIRATSDARQEPQKE 880
WD40-rpts
Query 881 DEDFLEARLTKDITYSILTDVAKRSWLGKKMSDVAISSLIEAILSIMGHANPVKYQCCIGALGQIFASYQVSPALRSETA 960
WD40-rpts
Query 961 HRLLDDTTHSNPLVRELAWEGLKRLGMISRLFALPLVQGLMDKDQKVRSKALTLMPDTGVHSKSSLLTLIQKPGIFQELQ 1040
WD40-rpts
Query 1041 QEMIGEESLDHLLGLRPTDIQVLITQIELLLNDNLSVSKRGDKADFSLEIPGSSAPKQAISLLLFPPTPEVLQIKAAKSQ 1120
WD40-rpts
Query 1121 RQIRSAGRKRARKLLRGLRKVKEAKLQKHEEIIEQGEAEAVQADLKIAPSRTSAGSLLKSPKEIEASDKDILKEHISVAL 1200
WD40-rpts
Query 1201 RLRKKLHPRIRDKKDKKVHKVRKPRKKKKKETEAIAVVAPEEILPPIVAEPPPLPTPSPPSLLPPLPLLRRRTHRMSSRG 1280
WD40-rpts
Query 1281 VGGMPGRILPPDSEWRDDLCRLTNLRIADSQSWMVNDLNAELVATATEILAGKYPSWELFEELCPLLEEEKIAEAKAKAQ 1360
WD40-rpts
Query 1361 AEAEAVAEAEEEAWQEGEPVSIDEEATREEVTGQEEMPEAGKQRLEKEEGLQEAEEETQEKDKEKEVAFLESEDVVKGKR 1440
WD40-rpts
Query 1441 RPRKGRKTRKTVKQEKMEKDERIEETISAEELAVTLKPEEVAEEGEGRSKKRKGTWEEEEGAEKREKEEEEEQMIEPKEA 1520
WD40-rpts
Query 1521 ITEAVERKLSWVEWKSHWDEWQKAQTQRAVLWEDWKKQCDKKHFEEEARLRVEGKLQPSEEVEEPKKMLTWDEWREVWEN 1600
WD40-rpts
Query 1601 ILHTKSEKELDLGEMFKEGEEEEEEEEEEIGEEEEEEEEEIYEEEAEGRKERRQIRMAQKQARADWRQARGERRRAREKK 1680
WD40-rpts
Query 1681 LLAHEEEKLAQEERRLAQEEGKLAHEYVKSATKGGKLAHIEMTLGEKETFLSQQEEILSREAEFLAQKKKKLARKLEKMA 1760
WD40-rpts
Query 1761 HEKEKIAKKINKVEEVKAVLAQKTETMMEKEKNLASEEKKVREEAKNQELDGQELALKEDELYEEAEKLEDKREALAKEE 1840
WD40-rpts
Query 1841 EMLALYEKNLSLEEEMLAQEAKHQMEEEKRLALEKDRRPEEVKHLQERREKLREQKQRLAQEKERIAQRKTELKVKKTRL 1920
WD40-rpts
Query 1921 AQMEESLSQERHKLSLEKERLTERGKALHDKEKKLLKGKEQLQDIKGKLETYREKLINLSKKLMEEKTVFVAKKEKLTVT 2000
WD40-rpts
Query 2001 EKKIEMEDMLLAEKQGKLAVEKVKLAKEITEVIQNSQLIREETEIIKEAEELTSEMKRVAREKMELVGELEEPPKTEIKE 2080
WD40-rpts
Query 2081 AILRRRRLAMHEVDLMKKRVSIEEKILAYEDRLLATEEKDAARGHLELTREQRICAHEERKLAKATRKLDREKGVSKKPA 2160
WD40-rpts
Query 2161 ESRKTLKVLINLISKVRKVTQKESKMTKMNRSLLIKEAELSMEEKRLDIKELEDTEEQPEIIMEERKLAKMERRLARQMR 2240
WD40-rpts
Query 2241 RLSTEEKRMAEEEGQFDWESKQDSEEEVEEEEVEEEEVGEEKVEEEEVGEEEEDLETEKGALFFKRLRIRRKGFMEILPG 2320
WD40-rpts
Query 2321 MEKFYNLLEQVGHKENFFQDMESLLVEVDKESLSEGEREEAEKDTEAEVEEEEGEEKEEEGEEKEEEGEEGEKKEEEGKK 2400
WD40-rpts
Query 2401 EEKGKKEGEKKEEEEKKEGEKKEEEWKEEKEQVEGEEREKKGKEIEEWKREKEMEEIEKKEKEKEREAGWEEEEEEGEEE 2480
WD40-rpts
Query 2481 EEEEEQKEEKEQVEGEEREKKGEEKGEEKGEEKGEEKGEEEIEKEEKKMEKKVHEEEEEKEEEKKEEEIEESSSEEEVKS 2560
WD40-rpts
Query 2561 VGHIEEEEEKHLWEEERKEEAVLKREKPKIQVERKKVIQRRAMLPQEIPVLKGSAMRLSSPLGKLVPFPEGMEPEEKQIS 2640
WD40-rpts
Query 2641 GEEEARVFKIPTMTPMISLRAKVMDKERELLDKSKLEPLHLLEVISEYKAAGMTTPFTSQTVRRAMEAHRLRLKTKWFLQ 2720
WD40-rpts
Query 2721 HHTSLAGPIGRLRLPKILPEEQYSETGVSDIEWLHGVLKQMEAGEELPRYTFHRLCRLLKELTESGDLQWLHLAVLEAIV 2800
WD40-rpts
Query 2801 HRHKQVADSRSSKPSREPMSPKHLKVIPPIKGREQDDWLKPSAVPIPGSLANKRVTDPKVIHWRLLGEPHRSTRLQQLSD 2880
WD40-rpts
Query 2881 ALDEMETRSFDPTTRDILTDVHSSINNQTLALMFQKDFGDLKSKSRYPKLPKLEKKPISKKPEEVPPWETFVALYHVLRM 2960
WD40-rpts
Query 2961 LQQRYAKDRATWMEKFYQLMDLYQIKSPGIQRLLLDLLLTEEPQSQEFISKETVEAKKLMPGERLLYCLVCGSSHPPQIP 3040
WD40-rpts
Query 3041 LEFRNVIPLPEQNNVYTISPKGITKYGILELAWKSLPQADIHLIRKESHVIVPTP 3095
WD40-rpts
 3 WD40-repeats found in QUERY=ENSMUSP00000120285 (Len=3095): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 9 270-311 2.83 231.42 0.04635 15.0% 15.73 WD 2: Seg 12 392-437 3.00 238.69 0.03715 15.0% 23.42 WD 3: Seg 21 584-634 6.20 370.71 0.00063 30.0% 21.40Multiple sequence alignment of 3 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 270-311 FPQSQS-----------LHSFRAH------PTVVVCIQSRAEPHTLLTAGKEGIIKEWN WD 2 392-437 VSPVTG-----------DLLLITWPFSVLDHAVDWAYDPNKEELF--VATGTSEVLVFD WD 3 584-634 LREFISFGSSQGIKFIETLPLHQC------PITSFDVCLSLNVFA--TGGSDGTVRLWD WD40 Template TGECLR-----------TLSGHTS------GVTSVSFSPDGKRLV--SGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |