Input parameters:

  Query = ENSMUSP00000119959 (Len=2235)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000119959, Len=2235):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XKLLDELSDPEASKLIGEVFNIVSQQSTARPGCIIELDAITDQCGSNTQLLHVFQEDFIIGYKPHKEDMEKKEKESEIFF 80  
WD40-rpts                                                                                      

Query       81 QPSQGYRPPPFSEKFFLVVIEKDGNNNSILHMWHLHLKSVQACLAKAAEGISSDSLLSVPGQKNLDSSPETSSSMSSVPH 160 
WD40-rpts                                                                                      

Query      161 SSSIANLQTASKLILSSRLVYSQPLDLPEAVEVIRATPSAGHLSSSSIYPVCLAPYLVVTTCSDNKVRFWKCCMETNSLG 240 
WD40-rpts                                         (_______________WD 1_______________)         

Query      241 NTSDESETYHWRRWPLMNDEGEDNSSTVSIVGRPVAVSCSYTGRLAVAYKQPIHHNGFISKEFSMHVCIFECESTGGSEW 320 
WD40-rpts                                                                                      

Query      321 VLEQTIHLDDLVKVGSVLDSRVSVDSNLFVYSKSDAFLSKDRYLIPNIKHLVHLDWVSKEDGSHILTVGVGANIFMYGRL 400 
WD40-rpts                                                                                      

Query      401 SGIVSDQTNSKDGVAVITLPLGGSIKQGVKSRWVLLRSIDLVSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWKHS 480 
WD40-rpts                                                                                      

Query      481 VKFGNVDADSPVEETIQDHSALKSSMLARKSIVEGAAIPDDVFCSPTVVQDGGLFEAAHALSPTLPQYHPTQLLELMDLG 560 
WD40-rpts                                                                                      

Query      561 KVRRAKAILSHLVKCIAGEVAIVRDPDAGEGTKRHLSRTISVSGSTAKDTVTIGKDGTRDYTEIDSIPPLPLHALLAADQ 640 
WD40-rpts                                                                                      

Query      641 DTSYRISEDSTKKPQSYEDHIESQSEDQYSELFQVQEITTDDIDLEPEKRENKSKVINLSQYGPACFGQEHARVLSSHLM 720 
WD40-rpts                                                                                      

Query      721 HSSLPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLLAMRLHTCLLTSLPPLYRVQLLHQGVSTC 800 
WD40-rpts                                                                                      

Query      801 HFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRNVNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVV 880 
WD40-rpts                                                                                      

Query      881 WGLFRSQHDEKMTTFFSHNFNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLFE 960 
WD40-rpts                                                                                      

Query      961 SEFETSSTYISILNQKILGCQKDGTGFDCKRLHPDPFLRSLAYWVVKDYTRALDTLLEQTPKEDDEQQVIIKSCNPVVFS 1040
WD40-rpts                                                                                      

Query     1041 FYNYLRTHPLLIRRNLASPEGTLATLGLKTEKNIADKINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKISSLTA 1120
WD40-rpts                                                                                      

Query     1121 KKDQLDSVSGRMENGPSESKPVSRSDGGSGADWSAVTSSQFDWSQPMVTVDEEPLRLDWGDDHDGALEEDDGGGLVMKTT 1200
WD40-rpts                                                                                      

Query     1201 DAKKAGQEQSASDPRALLTPQDEECADGDTEVDVIAEQLKFRACLKILMTELRTLATGYEVDGGKLRFQLYNWLEKEIAA 1280
WD40-rpts                                                                                      

Query     1281 LHEICNHESVIKEYSSKAHSTVETERLDQEEMVDKPDIGSYERHQIERRRLQAKREHAERRKLWLQKNQDLLRVFLSYCS 1360
WD40-rpts                                                                                      

Query     1361 LHGAQGGGLASVRMELKFLLQESQQETTVKQLQSPLPLPTTLPLLSASIASTKTVIANPVLYLNNHIHDILYTIVQMKTP 1440
WD40-rpts                                                                                      

Query     1441 PHPSVEDVKVHTLHSLAASLSASIYQALCDSHSYSSQSEGNQFTGMAYQGLLLSDRRRLRTESIEEHATPNSAPAQWPGV 1520
WD40-rpts                                                                                      

Query     1521 SSLINLLSSAQDEDQPKLNVLLCEAVVAVYLSLLIHALATNSSNELFRLAAHPLNNRMWAAVFGGGVKLVVKPRRQSESI 1600
WD40-rpts                                                                                      

Query     1601 AAPPVASEDMDKHRRRFNMRMLVPGRPVKDATPPPVPAERPSYKEKFIPPELSMWDYFVAKPFLPLSDSGVIYDSDESVH 1680
WD40-rpts                                                                                      

Query     1681 SDDEEDDAFFSDTQIQEHQDPNSYSWALLHLTMVKLALHNIKNFFPIAGLEFSELPVTSPLGIAVIKNLENWEQILQEKM 1760
WD40-rpts                                                                                      

Query     1761 DHFEGPPPNYVNTYPTDLSVGAGPAILRNKAMLEPENTPFKSRDSSALPVKRLWHFLVKQEVLQETFIRYIFTKKRKQSE 1840
WD40-rpts                                                                                      

Query     1841 VEADLGYPGGKAKVIHKESDMIMAFSINKANCNEIVLASTHDVQELDVTSLLACQSYIWIGEEYDRESKSSDDIDYRGST 1920
WD40-rpts                                                                                      

Query     1921 TTLYQPGAASHSSSQPHPPPSLPWLGSGQTSTGATVLMKRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCF 2000
WD40-rpts                                           (______________WD 2_____________)(_________

Query     2001 RQAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNQTASNPKPYMSWQCHSKATSDFAFITSSSLVATSGHSNDNRNVCL 2080
WD40-rpts      __________WD 3__________________)           (________________WD 4_______________

Query     2081 WDTLISPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGYICIFDIRQRQLIHTFQAHDSAIKALALDSCEEYFTTGS 2160
WD40-rpts      _)         (_______________WD 5_______________)   (_________________WD 6________

Query     2161 AEGNIKVWRLTGHGLIHSFKSEHAKQSIFRNIGAGVMQIAISQDNRLFSCGADGTLKTRVLPSAFNIPNRILDIL 2235
WD40-rpts      ________)                                                                  

6 WD40-repeats found in QUERY=ENSMUSP00000119959 (Len=2235):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   196-231      3.10  242.70  0.03288       15.0%     20.58
  WD 2:  Seg 39  1958-1990     4.60  304.85  0.00484       12.5%     45.53
  WD 3:  Seg 42  1991-2033     5.26  331.85  0.00210       15.0%     55.81
  WD 4:  Seg 46  2045-2082     3.57  261.93  0.01823       10.0%     45.17
  WD 5:  Seg 49  2092-2127     6.13  368.04  0.00068       25.0%     48.36
  WD 6:  Seg 52  2131-2169     7.38  419.50  0.00014       25.0%     51.00

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  196-231    -------ATPSAGHLSSSSIYPVCLAPYLVVTTC---SDNKVRFWK
   WD 2 1958-1990   ----------MKRNLHNVKRMTSHPVHQYYLTGA---QDGSVRMFE
   WD 3 1991-2033   WTRPQQLVCFRQAGNARVTRLYFNSQGNKCGVAD---GEGFLSIWQ
   WD 4 2045-2082   --------MSWQCHSKATSDFAFITSSSLVATSGHSNDNRNVCLWD
   WD 5 2092-2127   -------IHGFTCHDHGATVLQYAPKQQLLISGG---RKGYICIFD
   WD 6 2131-2169   -R---QLIHTFQAHDSAIKALALDSCEEYFTTGS---AEGNIKVWR

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSPDGKRLVSGS---EDGTIKVWD