Input parameters:

  Query = ENSMUSP00000118423 (Len=602)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000118423, Len=602):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 FSPMAKGPQRYMVSTGADGTVCFWQWDLESLKFSPRPLKFTEKPRPGVQMLCSSFSVGGMFLATGSTDHVIRMYFLGFDA 80  
WD40-rpts                                            (________________WD 1_______________)     

Query       81 PEKIAELESHTDKVDSIQFCNNGDRFLSGSRDGTARIWRFEQLEWRSILLDMSARISGDTSSEEERFMKPKVTMIAWNQD 160 
WD40-rpts      (_________________WD 2________________)   (_________________________WD 3________

Query      161 DSTVVTAVNDHVLKVWSSYTGQLLHNLLGHADEVFVLETHPFDSRIMLSAGHDGSIFIWDITKGIKMKHYFNMIEGQGHG 240 
WD40-rpts      ________________)   (_________________WD 4_________________)   (________________

Query      241 AVFDCKFSQDGQHFACTDSHGHLLIFGFGCSKPYEKIPDQMFFHTDYRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDG 320 
WD40-rpts      ___WD 5___________________)_______________WD 6________________)           (_____

Query      321 NPHPTKFQRLVPGRENSADEHLVPQLGYVATSDGEVIEQIISLHTNDSGDASPESSVLDGMIRQLQQQQDQRLGVDQDGT 400 
WD40-rpts      __________WD 7_______________)                                                  

Query      401 ANGLPSGEGTPRRGSFRRLSLDIQSPPNIGLRRSGQVEGVRQMHQNAPRSQIATERDLQAWKRRVVVPEAPPGMFRRLED 480 
WD40-rpts                                                                                      

Query      481 IRIERGEEERNLYVIGRKKKTFQVPQKETSYDQSEGSCSSEDDEWRNDRRSGSDSDSSSDSSSQYSDWTADTGINLQPPL 560 
WD40-rpts                                                                                      

Query      561 RMSCRRRVTRFCSTSEDEMSMENISPPKRRRKRRKESKPKRE 602 
WD40-rpts                                                

7 WD40-repeats found in QUERY=ENSMUSP00000118423 (Len=602):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    39-75       6.29  374.51  0.00056       22.5%     39.89
  WD 2:  Seg  6    81-119     10.06  530.20  4.4e-06       40.0%     52.78
  WD 3:  Seg 10   123-177      6.97  402.67  0.00023       22.5%     34.85
  WD 4:  Seg 14   181-220      8.89  481.91  2.0e-05       35.0%     55.28
  WD 5:  Seg 18   224-267      6.08  365.86  0.00073       20.0%     53.25
  WD 6:  Seg 21   265-303      4.39  296.13  0.00634       10.0%      9.94
  WD 7:  Seg 25   315-350      5.25  331.63  0.00211        7.5%     14.90

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-75     K---FTEKPRPGVQ-----MLCSSFS----------------V-GGMFLATGSTDHVIRMYF
   WD 2   81-119    -PEKIAELESHTDK-----VDSIQFC----------------N-NGDRFLSGSRDGTARIWR
   WD 3  123-177    -LEWRSILLDMSAR-----ISGDTSSEEERFMKPKVTMIAWNQ-DDSTVVTAVNDHVLKVWS
   WD 4  181-220    -GQLLHNLLGHADE-----VFVLETH----------------PFDSRIMLSAGHDGSIFIWD
   WD 5  224-267    -GIKMKHYFNMIEGQGHGAVFDCKFS----------------Q-DGQHFACTDSHGHLLIFG
   WD 6  265-303    -IFGFGCSKPYEKI-----PDQMFFH----------------T-DYRPLIRDSNNYVLDEQT
   WD 7  315-350    ----LVDVDGNPHP-----TKFQRLV----------------P-GRENSADEHLVPQLGYVA

   WD40 Template    TGECLRTLSGHTSG-----VTSVSFS----------------P-DGKRLVSGSEDGTIKVWD