Input parameters:

  Query = ENSMUSP00000118325 (Len=699)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000118325, Len=699):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDGFSSYSSLYDTSSLLQFCNDDSASAASSMEVSDRIASLEQRVQMQEDDIQLLKSALADVVRRLNITEEQQAVLNRKG 80  
WD40-rpts                                                                                      

Query       81 PTKARPLGQTLPLRTTVNNGTVLPKKPSASLPAPSGARKEVVVPVTKSINRTSSSERVSPGGRRESSGDSKGSRNRTGST 160 
WD40-rpts                                                                                      

Query      161 SSSSSGKKNSESKPKEPAFSPEEGYVKMFLRGRPVTMYMPKDQVDSYSLEAKAELPTKRLKLEWVYGYRGRDCRNNLYLL 240 
WD40-rpts                                                                                      

Query      241 PTGETVYFIASVVVLYNVEEQLQRHYAGHNDDVKCLAVHPDRITIATGQVAGTSKDGKQLPPHVRIWDSVTLNTLHVIGI 320 
WD40-rpts                         (_________________WD 1________________)          (___________

Query      321 GFFDRAVTCIAFSKSNGGGHLCAVDDSNDHVLSVWDWQKEERLADVKCSNEAVFAADFHPTDTNIIVTCGKSHLYFWTLE 400 
WD40-rpts      __________WD 2_____________________)   (_________________WD 3________________)  

Query      401 GNSLNKKQGLFEKQEKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRISYAVQGAHEGGIFALCMLRDGTLVSGGGKD 480 
WD40-rpts            (________________WD 4________________)(___________________WD 5____________

Query      481 RRLISWNGNYQKLHKAEIPEQFGPIRTVAEGKGNVILIGTTRNFVLQGTLSGDFTPITQGHTDELWGLAIHASKPQFLTC 560 
WD40-rpts      ______)   (_________________WD 6________________)  (_________________WD 7_______

Query      561 GHDKHATLWDAVGHRPVWDKIIEDPAQSSGFHPSGSVVAVGTLTGRWFVFDTETKDLVTVHTDGNEQLSVMRYSPDGNFL 640 
WD40-rpts      _________)  (_________________WD 8________________)   (_________________WD 9____

Query      641 AIGSHDNCIYIYGVTDNGRKYTRVGPFQLHHPLGLVRELTIPGVKFRGLRDPLLGSVCL 699 
WD40-rpts      ____________)       (_________________WD10________________)

10 WD40-repeats found in QUERY=ENSMUSP00000118325 (Len=699):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   260-298      7.37  419.08  0.00014       25.0%     37.92
  WD 2:  Seg 13   309-356      6.08  365.70  0.00073       25.0%     42.14
  WD 3:  Seg 17   360-398      7.79  436.36  8.2e-05       15.0%     56.94
  WD 4:  Seg 21   407-444      5.94  360.05  0.00087       27.5%     48.90
  WD 5:  Seg 25   445-487      7.52  425.43  0.00011       20.0%     55.84
  WD 6:  Seg 29   491-529      5.30  333.60  0.00199        7.5%     50.97
  WD 7:  Seg 33   532-570      8.49  465.29  3.3e-05       17.5%     54.29
  WD 8:  Seg 37   573-611      6.93  400.88  0.00025       22.5%     55.86
  WD 9:  Seg 41   615-653      8.71  474.36  2.5e-05       22.5%     58.17
  WD10:  Seg 44   661-699      3.66  265.66  0.01625        7.5%     28.87

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  260-298    -EQ---L----QRHYAGHNDDVKCLAVHPDRIT----IATGQVAGTSKDGK
   WD 2  309-356    SVT---LNTLHVIGIGFFDRAVTCIAFSKSNGGGHLCAVDDSNDHVLSVWD
   WD 3  360-398    -EE---R----LADVKCSNEAVFAADFHPTDTN----IIVTCGKSHLYFWT
   WD 4  407-444    -KQ---G----LFEKQEKPKFVLCVTFSENGDT----I-TGDSSGNILVWG
   WD 5  445-487    KGTNRIS----YAVQGAHEGGIFALCMLRDGTL----VSGGGKDRRLISWN
   WD 6  491-529    -QK---L----HKAEIPEQFGPIRTVAEGKGNV----ILIGTTRNFVLQGT
   WD 7  532-570    -GD---F----TPITQGHTDELWGLAIHASKPQ----FLTCGHDKHATLWD
   WD 8  573-611    -GH---R----PVWDKIIEDPAQSSGFHPSGSV----VAVGTLTGRWFVFD
   WD 9  615-653    -KD---L----VTVHTDGNEQLSVMRYSPDGNF----LAIGSHDNCIYIYG
   WD10  661-699    -YT---R----VGPFQLHHPLGLVRELTIPGVK----FRGLRDPLLGSVCL

   WD40 Template    TGE---C----LRTLSGHTSGVTSVSFSPDGKR----LVSGSEDGTIKVWD