Input parameters:

  Query = ENSMUSP00000118310 (Len=298)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000118310, Len=298):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRFKVSKFRHMEARPSRREAWISDIRAVTTPTCGNHIKSSCSLIAFNSDRPGVLGVISLEGHEENKRHVTYLGCHSDLV 80  
WD40-rpts                         (___________________WD 1__________________)(_________________

Query       81 TDLDFSPFDDFLLASGSADRTIKLWRLSGTGEALPSVPGVVLGPEELPVEVLQFHPTVDGVLVSTAGKTVKVWDVAKQQP 160 
WD40-rpts      __WD 2___________________)             (_______________WD 3______________)   (__

Query      161 LTELEAHKDLVQSAVWSRDGAIVGTACKDKQLRIFDPRARTQASQSTQAHENNRDIRLAWTGIQEHLVSTGFNQMREREA 240 
WD40-rpts      _______________WD 4________________)     (___________________WD 5_______________

Query      241 KLWDTRLFSSALASVTLDTSPGTSLKAGWQLSPDSPIFWMAGSSSPECCKSGLSSQLL 298 
WD40-rpts      ___)    (___________________WD 6__________________)       

6 WD40-repeats found in QUERY=ENSMUSP00000118310 (Len=298):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    20-62       3.02  239.45  0.03630        7.5%      6.11
  WD 2:  Seg  6    63-106      8.34  459.23  4.0e-05       45.0%     50.52
  WD 3:  Seg 10   120-154      7.59  428.25  0.00011       22.5%     46.69
  WD 4:  Seg 13   158-196      8.74  475.81  2.4e-05       25.0%     55.21
  WD 5:  Seg 17   202-244      4.56  302.95  0.00514       17.5%     44.97
  WD 6:  Seg 20   249-291      4.68  307.97  0.00440       15.0%     49.05

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-62     -EA---WISDIRAVTTP----TCGNHIKS-SCSLIAFNSDRPG----VLGVISLEG
   WD 2   63-106    HEENKRHVTYLGCHSDL----VTDLDFSPFDDFLLA----SGS----ADRTIKLWR
   WD 3  120-154    --------VVLGPEELP----VEVLQFHP-TVDGVL----VST----AGKTVKVWD
   WD 4  158-196    -QQ---PLTELEAHKDL----VQSAVWSR-DGAIVG----TAC----KDKQLRIFD
   WD 5  202-244    --Q---ASQSTQAHENN---RDIRLAWTG-IQEHLV----STGFNQMREREAKLWD
   WD 6  249-291    -SS---ALASVTLDTSPGTSLKAGWQLSP-DSPIFW----MAG----SSSPECCKS

   WD40 Template    TGE---CLRTLSGHTSG----VTSVSFSP-DGKRLV----SGS----EDGTIKVWD