Input parameters:

  Query = ENSMUSP00000118179 (Len=1224)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000118179, Len=1224):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNY 80  
WD40-rpts      (________________WD 1_______________)   (_________________WD 2________________) 

Query       81 KLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVR 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 VWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW 240 
WD40-rpts      __)                               (_________________WD 5________________)(______

Query      241 EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLE 320 
WD40-rpts      _____________WD 6___________________)(__________________WD 7_________________)  

Query      321 RERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDA 400 
WD40-rpts                               (____________________WD 8___________________)          

Query      401 DSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEITKKIQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK 480 
WD40-rpts                                                                                  (___

Query      481 RTLASVKISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGVFIYTTSNHIKYAVTTGDHGI 560 
WD40-rpts      ______________WD 9_________________)                                            

Query      561 IRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALH 640 
WD40-rpts                                                                                      

Query      641 FVKDEKTRFSLALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM 720 
WD40-rpts                                                                                      

Query      721 KIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLSAATHGLDEEAESLKETFDPEKETIPDIDPNAKLLQPPAP 800 
WD40-rpts                                                                                      

Query      801 IMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTVGTEGWGEDAELQLDEDGFVEAPEGLGEDVLGKGQEEGGGW 880 
WD40-rpts                                                                                      

Query      881 DVEEDLELPPELDVPSGVSGSAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQFGPYKQLFL 960 
WD40-rpts                                                                                      

Query      961 QTYARGRTTYQALPCLPSMYSYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLV 1040
WD40-rpts                                                                                      

Query     1041 VDNKQEIAEAQQLITICREYIVGLCMEIERKKLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKT 1120
WD40-rpts                                                                                      

Query     1121 AATFARRLLELGPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI 1200
WD40-rpts                                                                                      

Query     1201 CRVTTVTEIGKDVIGLRISPLQFR 1224
WD40-rpts                              

9 WD40-repeats found in QUERY=ENSMUSP00000118179 (Len=1224):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-37       5.05  323.41  0.00272       22.5%     46.45
  WD 2:  Seg  4    41-79       7.11  408.18  0.00020       27.5%     56.49
  WD 3:  Seg  8    83-121      8.22  454.09  4.7e-05       35.0%     57.03
  WD 4:  Seg 12   125-163      8.76  476.59  2.3e-05       37.5%     56.05
  WD 5:  Seg 19   195-233      8.52  466.68  3.2e-05       32.5%     56.89
  WD 6:  Seg 23   234-277      8.30  457.45  4.3e-05       37.5%     51.13
  WD 7:  Seg 27   278-318      3.09  242.37  0.03321       15.0%     57.29
  WD 8:  Seg 34   346-390      3.18  245.88  0.02984       12.5%     37.92
  WD 9:  Seg 45   477-516      3.20  246.71  0.02908       15.0%     41.99

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-37     --------M----LTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWD
   WD 2   41-79     -CT-----L----IDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWN
   WD 3   83-121    -RR-----C----LFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWN
   WD 4  125-163    -RT-----C----VCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWD
   WD 5  195-233    -AV-----V----KHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWR
   WD 6  234-277    MNE-----SKAWEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWD
   WD 7  278-318    MSK---RTG----VQTFRRDHDRFWVLAAHPNLNLFAAGH-DGGMIVFK
   WD 8  346-390    FNSSKDVAV----MQLRSGSKFPVFNMSYNPAENAVLLCTRASNLENST
   WD 9  477-516    VQQ-----K----RTLASVKISKVKYVIWSADMSHVALLAKHAIVICNR

   WD40 Template    TGE-----C----LRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD