Input parameters:

  Query = ENSMUSP00000117931 (Len=233)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117931, Len=233):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGH 80  
WD40-rpts                                                                            (_________

Query       81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 
WD40-rpts      ________WD 1_________________)          (_________________WD 2_________________)

Query      161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233 
WD40-rpts         (__________________WD 3_________________)                             

3 WD40-repeats found in QUERY=ENSMUSP00000117931 (Len=233):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    71-110      7.91  441.48  7.0e-05       32.5%     44.92
  WD 2:  Seg 11   121-160      7.60  428.40  0.00010       40.0%     49.56
  WD 3:  Seg 15   164-204      7.62  429.31  0.00010       27.5%     55.09

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-110    DKNVPLV--CGHTAPVLDIAWCPHNDNV-IASGSEDCTVMVWE
   WD 2  121-160    REPVITL--EGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWD
   WD 3  164-204    GAAVLTLGPDVHPDTIYSVDWSR-DGAL-ICTSCRDKRVRVIE

   WD40 Template    GECLRTL--SGHTSGVTSVSFSP-DGKR-LVSGSEDGTIKVWD