Input parameters:

  Query = ENSMUSP00000117872 (Len=1020)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117872, Len=1020):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENREPKLKQAPYFRCEKGPNWVPVCQKCEACVLAWKIFATKEWFRRVNDISQRRFLVSILGQLNSLYLLQYFQNILETT 80  
WD40-rpts                                                                                      

Query       81 QGKDFIYNRSRIKLSRKGGKEEEVVKSSLNQMLDKTVERKMKEILYWFGNSTHRTKANYTLLLLQMCDSNLLLTAANVIR 160 
WD40-rpts                                                                                      

Query      161 VLFMKEWNSISGLHDDTPDVMFFPEKKYSGTQDTSYVSWAARPKPVSFPMSKHLGNKLGTENVDRETTEGKGESSLQCIH 240 
WD40-rpts                                                                                      

Query      241 EMNRQIFGKGGMSRLGDDPCNLLLSLDHVQLLSSGYSKYRDFIRDLPLHLSKYILRMLDKHSLNRCIFVSQHWATLAQQV 320 
WD40-rpts                                                                                      

Query      321 KVDQSMHSFIQNQISLLQGSYTRGIDPNYANKVSIPVPKIVDDGKRSRSKNQKWKLRTKTDYNLWNAYQNQETQLVQMEE 400 
WD40-rpts                           (_________________WD 1________________)                   (

Query      401 RNVFCGTYNIRVLSDTFDQNRIIHYNGGDLMAISSNRKIHLLDIMQTKELPIEFRGHAGSVRALFLSEEDNILLSGSYDL 480 
WD40-rpts      ___________________WD 2___________________)    (_________________WD 3___________

Query      481 SIRYWDVKTGACVRIFYGHQGTITCLDVYKNRLVSGAKDGQVKEWDIETGKCLKTFKHKDPILAAKISETYIVSSCERGI 560 
WD40-rpts      _____)   (________________WD 4_______________)   (_______________WD 5___________

Query      561 VKVWHVVTAQLQKTLTGHEGAVKCLFFNEWHLVSGGADGLVMAWSMVGKYERCLMAFKHPKEVLQVSLLYLRVISACGDG 640 
WD40-rpts      ____)   (________________WD 6_______________)  (_________________WD 7___________

Query      641 KIRIYNFLNGNCLKVIKVDARGDPVLSFFYQGNRMVAHTDSNILVFQFENVKWQYSSDKNKVKKSKDKEEEREETSLGDE 720 
WD40-rpts      _____)   (________________WD 8________________)                                (

Query      721 HSRSTIQGHSLKDSVSSKQEFSKSRVHLKQTKNLSSDDMETPVGEVSHPLQKLWKVPMTPDRFLLTISALQQAHNSEEFA 800 
WD40-rpts      __________________WD 9_________________)      (_____________________WD10________

Query      801 YPHRPRPQVIDAWGPSIPYPRKVLSLKGKSVQHAVDQLRSSNLPTGVRQTNIPLEIQKLQPNLKKSLHSPRVQATVPQPS 880 
WD40-rpts      _____________)                                                                  

Query      881 LIRPKVSDSLRGDEHLTSSIDGTMRRAGPLTSMQVIKPNRMLAPRGGTATLSPKKERPRFYTTLDPLRMNTGFMLMTVKE 960 
WD40-rpts                                                                                      

Query      961 EKEFAEAKMKEYEASVSTKEVDPGKASKAAWIRKIKGLPIDNFMKEGKTAAPELGQNVFI 1020
WD40-rpts                                                                  

10 WD40-repeats found in QUERY=ENSMUSP00000117872 (Len=1020):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   342-380      4.50  300.75  0.00550       12.5%     -4.91
  WD 2:  Seg  6   400-443      4.51  300.91  0.00547       20.0%     49.54
  WD 3:  Seg 10   448-486      9.24  496.34  1.3e-05       32.5%     55.16
  WD 4:  Seg 14   490-526      8.33  458.57  4.1e-05       37.5%     48.80
  WD 5:  Seg 18   530-565      6.15  368.52  0.00067       32.5%     52.15
  WD 6:  Seg 22   569-605      7.58  427.93  0.00011       32.5%     53.97
  WD 7:  Seg 26   608-646      8.17  452.14  5.0e-05       22.5%     53.32
  WD 8:  Seg 30   650-687      7.32  417.03  0.00015       30.0%     50.96
  WD 9:  Seg 36   720-760      5.14  326.94  0.00244       12.5%     38.92
  WD10:  Seg 39   767-814      2.92  235.40  0.04106       17.5%     21.13

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  342-380    -TRG------IDPNYANK--VSIPVPKIVDDGKRSRSK----------------NQKWKLRTKT
   WD 2  400-443    ERNVFCGTYNIRVLSDTF--DQNRI--IHYNGGDLMAI----------------SSNRKIHLLD
   WD 3  448-486    -KEL------PIEFRGHA--GSVRALFLSEEDNILLSG----------------SYDLSIRYWD
   WD 4  490-526    -GAC------VRIFYGHQ--GTITCLDVYKNR--LVSG----------------AKDGQVKEWD
   WD 5  530-565    -GKC------LKTF-KHK--DPILAAKISET--YIVSS----------------CERGIVKVWH
   WD 6  569-605    -AQL------QKTLTGHE--GAVKCLFF--NEWHLVSG----------------GADGLVMAWS
   WD 7  608-646    -GKY------ERCLMAFK--HPKEVLQVSLLYLRVISA----------------CGDGKIRIYN
   WD 8  650-687    -GNC------LKVIKVDA--RGDPVLSFFYQGNRMVAH----------------T-DSNILVFQ
   WD 9  720-760    -EHS------RSTIQGHSLKDSVSSKQEFSKSRVHLKQ----------------TKNLSSDDME
   WD10  767-814    --------------SHPL--QKLWKVPMTPDRFLLTISALQQAHNSEEFAYPHRPRPQVIDAWG

   WD40 Template    TGEC------LRTLSGHT--SGVTSVSFSPDGKRLVSG----------------SEDGTIKVWD