Input parameters:

  Query = ENSMUSP00000117818 (Len=299)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117818, Len=299):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 XAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQVLATASADGTIKLWA 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 LQDFSCLKVLCLSLQTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAIT 160 
WD40-rpts               (_________________WD 3_________________)   (_________________WD 4______

Query      161 GGSDSRIILWKDVTEAEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEAT 240 
WD40-rpts      __________)                                                                     

Query      241 VLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGSLEALL 299 
WD40-rpts                                                                 

4 WD40-repeats found in QUERY=ENSMUSP00000117818 (Len=299):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       8.72  474.71  2.5e-05       32.5%     44.16
  WD 2:  Seg  4    42-80       9.54  508.90  8.6e-06       40.0%     52.55
  WD 3:  Seg  9    90-129     10.37  543.05  3.0e-06       35.0%     42.99
  WD 4:  Seg 12   133-171      8.90  482.44  2.0e-05       30.0%     55.25

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     XAQ--TTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWA
   WD 2   42-80     -CQLLGVFTGHRRGLWNVQFSPTDQVLATASADGTIKLWA
   WD 3   90-129    LCLSLQTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWT
   WD 4  133-171    -NECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILWK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD