Input parameters:

  Query = ENSMUSP00000117710 (Len=1297)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117710, Len=1297):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAWMTYVSHWFEQDDWYEGLQRATMSQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMS 80  
WD40-rpts                                                                              (_______

Query       81 EHKKTITAISWCPHNPDLFASSSTDNLVIIWNVAEQKVIAKLDNIKETPACLGWCWNTHDAVAFVSQKGPLLIWTISGPD 160 
WD40-rpts      __________WD 1_________________)   (_________________WD 2_________________)_____

Query      161 SGVSVHKEAHSFASDICIFRWHTQKKGKVAFGHIDGSISIFQPDEEDPVTALEWDPLSTDYLLVANLHFGIRLLDSESLY 240 
WD40-rpts      ___________WD 3________________)   (_________________WD 4_________________)   (_

Query      241 CITTFNLPSAAVSVQCLAWVPSAPGMFITGDSQVGVLRIWNVSRTTPIDNFKLKKTGFHCFHVVNSPPKKKFSVQSPNKN 320 
WD40-rpts      __________________WD 5__________________)(___________________WD 6_______________

Query      321 HYISSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNVLATASFDGT 400 
WD40-rpts      ____)_______________WD 7________________)(___________________WD 8_______________

Query      401 IKVWDINTLTAVYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDIQKGKIIQRFNEHGKNGIFYIAWSHKDSKRIA 480 
WD40-rpts      ____)   (_________________WD 9_________________)   (__________________WD10______

Query      481 TCSGDGFCIIRTVDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNIRVFYVATSSNQPLKVFSGHTARVFHVKWSPL 560 
WD40-rpts      ___________)(__________________WD11_________________)     (_________________WD12

Query      561 REGILCSGSDDGSVRIWDYTQDACVSTLNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRGGVCLDTVYDHGADVYG 640 
WD40-rpts      _________________)   (_________________WD13_________________)   (_______________

Query      641 LTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWDEVIGNTDNAIRQDCPPLLCGKVSRDIKQEVEKLTCNP 720 
WD40-rpts      __WD14_________________)          (_________________WD15________________)       

Query      721 RAKKLRLFSECLSPPGGSDNLWNLVSVIKGQDDSLLPQNYCKGMMHLKHLIKFRTSEAQELTTIKMSKFGGGVGAPTKEK 800 
WD40-rpts                                                                                      

Query      801 KLKEAAEIHLRLGQIQRYCELMVELGEWDKALSVAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVKKLVNFFV 880 
WD40-rpts                                                                                      

Query      881 SRGQLKEALLVAQAACEGNMQNAHVSTPKGASNSDDIHKEDFNELLHKVINELAEWYFQDGQAVLAACCHLAVDDIELAM 960 
WD40-rpts                                                                                      

Query      961 AYLIRGNELELAVSVGTVLGEPAAPAMHYALQLLATKCMMIPMCFPSVVYRNLAADLLLMTPGSEVHLVKLCAFYPGCIE 1040
WD40-rpts                                                                                      

Query     1041 EINDLHKKCNLPPAEECTQLAETARADGNVFETIKYYLLSQEPEKALPIGIDFVKGCISNSNWTLDTVYPVLDLMSYIRT 1120
WD40-rpts                                                                                      

Query     1121 EKLLLHTCTEARNELLILCGYIGALLAIRRQYQSIVPSLYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSTKQSSE 1200
WD40-rpts                                                                                      

Query     1201 DSPYTPPSDSQRTVYETLLKRLKEEPLKGITGLDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSTISLNDALMWA 1280
WD40-rpts                                                                                      

Query     1281 KVNPFSPLGTGIRLNPF 1297
WD40-rpts                       

15 WD40-repeats found in QUERY=ENSMUSP00000117710 (Len=1297):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    73-112      6.72  392.43  0.00032       22.5%     51.99
  WD 2:  Seg  9   116-155      5.37  336.63  0.00181       10.0%     55.76
  WD 3:  Seg 12   154-192      3.05  240.82  0.03482       12.5%     14.89
  WD 4:  Seg 15   196-235      5.26  331.96  0.00209       17.5%     56.58
  WD 5:  Seg 19   239-281      4.65  306.68  0.00458       20.0%     52.56
  WD 6:  Seg 23   282-325      5.30  333.77  0.00198       15.0%     51.82
  WD 7:  Seg 26   323-361      5.66  348.31  0.00126       15.0%     37.83
  WD 8:  Seg 30   362-405      7.29  415.96  0.00015       40.0%     52.59
  WD 9:  Seg 34   409-448      6.11  367.11  0.00070       17.5%     57.49
  WD10:  Seg 38   452-492      5.22  330.15  0.00221       25.0%     55.09
  WD11:  Seg 42   493-533      6.59  386.93  0.00038       25.0%     55.55
  WD12:  Seg 46   539-578      8.32  458.25  4.1e-05       42.5%     51.98
  WD13:  Seg 50   582-621      8.12  450.13  5.3e-05       45.0%     54.66
  WD14:  Seg 54   625-664      7.43  421.52  0.00013       30.0%     55.10
  WD15:  Seg 59   675-713      3.58  262.49  0.01792       20.0%     27.53

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   73-112    -FK---LHA----IMSEHK-K--TITAISWC-PHN--P-D-LFASSSTDNLVIIWN
   WD 2  116-155    -QK---VIA----KLDNIK-E--TPACLGWC-W-N--T-HDAVAFVSQKGPLLIWT
   WD 3  154-192    -WT---ISG----PDSGVS-V--HKEAHSFA-S-D--I-C-IFRWHTQKKGKVAFG
   WD 4  196-235    -GS---ISI----FQPDEE-D--PVTALEWD-PLS--T-D-YLLVANLHFGIRLLD
   WD 5  239-281    -LY---CIT----TFNLPS-AAVSVQCLAWV-P-SAPG-M-FITGDSQVGVLRIWN
   WD 6  282-325    VSR---TTPIDNFKLKKTG-F--HCFHVVNS-P-P--K-K-KFSVQSPNKNHYISS
   WD 7  323-361    -IS---STS----EAVPPP-N--LTQNQAFS-L-P--P-G-HVVCCFLDGGVGLYD
   WD 8  362-405    MGAKKWDFL----RELGHV-E--TIFDCKFK-P-D--DPN-VLATASFDGTIKVWD
   WD 9  409-448    -LT---AVY----TSPGNE-G--VIFALSWA-PGD--L-N-CIAGATSRNGAFIWD
   WD10  452-492    -GK---IIQ----RFNEHGKN--GIFYIAWSHK-D--S-K-RIATCSGDGFCIIRT
   WD11  493-533    VDG---KLL----HKYKHP-A--AVFGCDWS-Q-N--N-KDMIATGCEDKNIRVFY
   WD12  539-578    -NQ---PLK----VFSGHT-A--RVFHVKWS-P-L--R-EGILCSGSDDGSVRIWD
   WD13  582-621    -DA---CVS----TLNGHT-A--PVRGLMWN-T-E-IP-Y-LLISGSWDYTIKVWD
   WD14  625-664    -GV---CLD----TVYDHG-A--DVYGLTCH-P-S--R-PFTMASCSRDSTVRLWS
   WD15  675-713    NIL---ADR----SW-DEV-I--GNTDNAIR-Q-D--C-P-PLLCGKVSRDIKQEV

   WD40 Template    TGE---CLR----TLSGHT-S--GVTSVSFS-P-D--G-K-RLVSGSEDGTIKVWD