Input parameters:

  Query = ENSMUSP00000117676 (Len=246)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117676, Len=246):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 GDITSCSVLWLNNAFQDVESENVNVVKRLFKIQNLNASTIRTVMVADCSRFDSPDLLLDASDQAGLPCRVFDLGGDTEEE 80  
WD40-rpts                                       (_________________WD 1________________)        

Query       81 ATDPGIKQILPHQMTTAGPVLGEGRGSDAFFDALDHVIDVHGHIIGMGLSPDNRYLYVNSRAWPPGSVVADPMQPPPIAE 160 
WD40-rpts                                      (_________________________WD 2__________________

Query      161 EIDLLVFDLKTMREVKRALRAHRAYTPNDECFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLAKLRHEDVVNSVAFSPQ 240 
WD40-rpts      _______)           (________________WD 3_______________)                        

Query      241 EQELLL 246 
WD40-rpts            

3 WD40-repeats found in QUERY=ENSMUSP00000117676 (Len=246):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    34-72       3.33  252.37  0.02446       20.0%     -1.69
  WD 2:  Seg  5   113-168      3.72  268.25  0.01501       20.0%     40.14
  WD 3:  Seg  8   180-216      6.06  364.91  0.00075       17.5%     33.47

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   34-72     NLNA-STIRTVMVADCSRFDSPDLLLDASD-------------------QAGLPCRVFD
   WD 2  113-168    ---ALDHVIDVHGHIIGMGLSPDNRYLYVNSRAWPPGSVVADPMQPPPIAEEIDLLVFD
   WD 3  180-216    RAHRAYT---PNDECFFIFLDVSRDFVASG-------------------AEDRHGYIWD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSG-------------------SEDGTIKVWD