Input parameters:

  Query = ENSMUSP00000117489 (Len=212)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117489, Len=212):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 LSSGETRWEQLLGDRIESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWTFTTEDAVKSSPAVDPTTGLIYVGSHDQHA 80  
WD40-rpts        (_________________WD 1_________________)   (_________________WD 2_____________

Query       81 YALDIYEKKCVWKLNCEGALFSSPCVSLSPHHLYCATLGGLLLALNPVWRFAAGGPIFSSPCVSAAEQEIFFGSHDCFIY 160 
WD40-rpts      ___)   (_________________WD 3________________)                                  

Query      161 CCSKEGHLRWKFETTARVYATPFAFSNHPRSDDALLAAASTDGKLWVLESRS 212 
WD40-rpts                                                          

3 WD40-repeats found in QUERY=ENSMUSP00000117489 (Len=212):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       3.57  261.97  0.01821       22.5%     48.27
  WD 2:  Seg  5    46-84       3.63  264.45  0.01687       22.5%     50.38
  WD 3:  Seg  9    88-126      2.84  232.04  0.04548       15.0%     51.63

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     SGETRWEQLLGDRIESSACVSKCGNFIVVGCYNGLVYVLK
   WD 2   46-84     -GEKYWTFTTEDAVKSSPAVDPTTGLIYVGSHDQHAYALD
   WD 3   88-126    -KKCVWKLNCEGALFSSPCVSLSPHHLYCATLGGLLLALN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD