Input parameters:

  Query = ENSMUSP00000117453 (Len=732)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000117453, Len=732):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPTPLQSGQPFKFSVLEICDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQAEI 80  
WD40-rpts                                                                          (___________

Query       81 VKRLSAICAQMVPFLTQEHQQQVLQAVDRAKQQQNQLQPLSHAPPVPLTPRPAGLVGAGATGLLALSGALAAQAQLVAAV 160 
WD40-rpts      ____________________________________WD 1________________________________________

Query      161 KEDRVGVDAEGSRVDRAASRSSSPSPPESLVEEDHPSSRGGSGKQQRAEDKDLSGPYDSEEDKSDYNLVVDEDQPSEPPS 240 
WD40-rpts      _______)                                                                        

Query      241 PVTTPCGKAPLCIPARRDLTDSPASLASSLGSPLPRSKDIALNDLPTGTPASRSCGTSPPQDSSTPGPSSASHLCQLAAQ 320 
WD40-rpts                                                                                      

Query      321 PAAPTDSIALRSPLTLSSPFTSSFSLGSHSTLNGDLSMPGSYVGLHLSPQVSSSVVYGRSPLMAFESHPHLRGSSVSLPG 400 
WD40-rpts                                                                               (______

Query      401 IPVAKPAYSFHVSADGQMQPVPFPSDALVGTGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVGQPGSK 480 
WD40-rpts      ___________WD 2_________________)(_________________WD 3_________________)       

Query      481 TPVAQLDCLNRDNYIRSCKLLPDGQSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAVSPDAKVCFSCCSDGNI 560 
WD40-rpts          (_______________WD 4_______________)     (_________________WD 5_____________

Query      561 VVWDLQNQAMVRQFQGHTDGASCIDISDYGTRLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPNQDWLAVGMES 640 
WD40-rpts      ___)   (_________________WD 6________________)(__________________WD 7___________

Query      641 SHVEVLHVRKPEKYQLRLHESCVLSLKFASCGRWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISRNNKYIVTGS 720 
WD40-rpts      ______)(__________________WD 8_________________)(__________________WD 9_________

Query      721 GDKKATVYEVVY 732 
WD40-rpts      ________)   

9 WD40-repeats found in QUERY=ENSMUSP00000117453 (Len=732):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    69-168      2.78  229.39  0.04928       22.5%     -25.49
  WD 2:  Seg  3   394-433      3.57  262.33  0.01801       15.0%     13.67
  WD 3:  Seg  6   434-473      6.54  384.83  0.00041       25.0%     50.19
  WD 4:  Seg 10   485-520      8.19  453.03  4.9e-05       25.0%     48.81
  WD 5:  Seg 13   526-564      8.72  474.90  2.5e-05       30.0%     55.90
  WD 6:  Seg 17   568-606      9.93  524.89  5.2e-06       35.0%     52.46
  WD 7:  Seg 21   607-647      6.79  395.14  0.00029       20.0%     52.89
  WD 8:  Seg 25   648-688      8.33  458.68  4.1e-05       27.5%     54.03
  WD 9:  Seg 29   689-729      7.74  434.21  8.7e-05       30.0%     53.95

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   69-168    -GL-NIEMHKQAEIVKRLSAICAQMVPFLTQEHQQQVLQAVDRAKQQQNQLQPLSHAPPVPLTPRPAGL-VGAGATGLLALSGALAAQAQLVAAVKEDRVGVD
   WD 2  394-433    -SS-VS--------------------LPGI---------------------PVAKPAYSFHVSADGQMQPVPFPSDA--------------------LVGTGI
   WD 3  434-473    PRH-AR--------------------QLHT--------------------LAHGEVVCAVTISSSTQHV-YTGG-KG--------------------CVKVWD
   WD 4  485-520    -----Q--------------------LDCL---------------------NRDNYIRSCKLLPDGQSL-IVGGEAS--------------------TLSIWD
   WD 5  526-564    -PR-IK--------------------AELT---------------------SSAPACYALAVSPDAKVC-FSCCSDG--------------------NIVVWD
   WD 6  568-606    -QA-MV--------------------RQFQ---------------------GHTDGASCIDISDYGTRL-WTGGLDN--------------------TVRCWD
   WD 7  607-647    LRE-GR--------------------QLQQ--------------------HDFSSQIFSLGHCPNQDWL-AVGMESS--------------------HVEVLH
   WD 8  648-688    VRKPEK--------------------YQLR---------------------LHESCVLSLKFASCGRWF-VSTGKDN--------------------LLNAWR
   WD 9  689-729    TPYGAS--------------------IFQS---------------------KESSSVLSCDISRNNKYI-VTGSGDK--------------------KATVYE

   WD40 Template    TGE-CL--------------------RTLS---------------------GHTSGVTSVSFSPDGKRL-VSGSEDG--------------------TIKVWD